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Robust estimation of Hi-C contact matrices using fused lasso reveals preferential insulation of super-enhancers by strong TAD boundaries
Yixiao Gong, View ORCID ProfileCharalampos Lazaris, Aurelie Lozano, Prabhanjan Kambadur, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
doi: https://doi.org/10.1101/141481
Yixiao Gong
1Department of Pathology, NYU School of Medicine, New York, NY 10016, USA
2Laura and Isaac Perlmutter Cancer Center and Helen L. and Martin S. Kimmel Center for Stem Cell Biology, NYU School of Medicine, New York, NY 10016, USA
Charalampos Lazaris
1Department of Pathology, NYU School of Medicine, New York, NY 10016, USA
2Laura and Isaac Perlmutter Cancer Center and Helen L. and Martin S. Kimmel Center for Stem Cell Biology, NYU School of Medicine, New York, NY 10016, USA
Aurelie Lozano
3Center for Computational and Statistical Learning, IBM T.J. Watson Research Center, NY 10598, USA
Prabhanjan Kambadur
4Bloomberg LP, 731 Lexington Avenue, New York City, NY, USA
Panagiotis Ntziachristos
5Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA
Iannis Aifantis
1Department of Pathology, NYU School of Medicine, New York, NY 10016, USA
2Laura and Isaac Perlmutter Cancer Center and Helen L. and Martin S. Kimmel Center for Stem Cell Biology, NYU School of Medicine, New York, NY 10016, USA
Aristotelis Tsirigos
1Department of Pathology, NYU School of Medicine, New York, NY 10016, USA
2Laura and Isaac Perlmutter Cancer Center and Helen L. and Martin S. Kimmel Center for Stem Cell Biology, NYU School of Medicine, New York, NY 10016, USA
6Applied Bioinformatics Laboratories, NYU School of Medicine, NY 10016, USA
Article usage
Posted May 25, 2017.
Robust estimation of Hi-C contact matrices using fused lasso reveals preferential insulation of super-enhancers by strong TAD boundaries
Yixiao Gong, Charalampos Lazaris, Aurelie Lozano, Prabhanjan Kambadur, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
bioRxiv 141481; doi: https://doi.org/10.1101/141481
Robust estimation of Hi-C contact matrices using fused lasso reveals preferential insulation of super-enhancers by strong TAD boundaries
Yixiao Gong, Charalampos Lazaris, Aurelie Lozano, Prabhanjan Kambadur, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
bioRxiv 141481; doi: https://doi.org/10.1101/141481
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