ABSTRACT
Summary The GDC (Genomic Data Commons) data portal provides users with data from cancer genomics studies. Recently, we developed the R/Bioconductor TCGAbiolinks package, which allows users to search, download and prepare cancer genomics data for integrative data analysis. The use of this package requires users to have advanced knowledge of R thus limiting the number of users. To overcome this obstacle and improve the accessibility of the package by a wider range of users, we developed a graphical user interface (GUI) available through the R/Bioconductor package TCGAbiolinksGUI. Availability: The TCGAbiolinksGUI package is freely available within the Bioconductor project at http://bioconductor.org/packages/TCGAbiolinksGUI/.And a demo version is available at https://tcgabiolinksgui.shinyapps.io/demo/ and a docker image is available at https://hub.docker.com/r/tiagochst/tcgabiolinksgui/.
Contact hnoushm1{at}hfhs.org