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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
View ORCID ProfileM. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton G. Greenside, Nicholas A. Sinnott-Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa Kathiria, View ORCID ProfileSeung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang
doi: https://doi.org/10.1101/181206
M. Ryan Corces
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
2Department of Dermatology, Stanford University School of Medicine, Stanford, California, USA
Alexandro E. Trevino
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
4Department of Bioengineering, Stanford University School of Medicine and School of Engineering, Stanford California, USA
Emily G. Hamilton
5Program in Cancer Biology, Stanford University School of Medicine, Stanford, California, USA
Peyton G. Greenside
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
6Program in Biomedical Informatics, Stanford University School of Medicine, Stanford, California, USA
Nicholas A. Sinnott-Armstrong
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
Sam Vesuna
4Department of Bioengineering, Stanford University School of Medicine and School of Engineering, Stanford California, USA
Ansuman T. Satpathy
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
7Department of Pathology, Stanford University School of Medicine, Stanford, California, USA
Adam J. Rubin
2Department of Dermatology, Stanford University School of Medicine, Stanford, California, USA
Kathleen S. Montine
7Department of Pathology, Stanford University School of Medicine, Stanford, California, USA
Beijing Wu
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
Arwa Kathiria
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
Seung Woo Cho
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
2Department of Dermatology, Stanford University School of Medicine, Stanford, California, USA
Maxwell R. Mumbach
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
Ava C. Carter
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
2Department of Dermatology, Stanford University School of Medicine, Stanford, California, USA
Maya Kasowski
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
7Department of Pathology, Stanford University School of Medicine, Stanford, California, USA
Lisa A. Orloff
8Department of Otolaryngology Head and Neck Surgery, Stanford University School of Medicine, Stanford, California, USA
Viviana I. Risca
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
Anshul Kundaje
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
9Department of Computer Science, Stanford University, Stanford, California, USA
Paul A. Khavari
2Department of Dermatology, Stanford University School of Medicine, Stanford, California, USA
Thomas J. Montine
7Department of Pathology, Stanford University School of Medicine, Stanford, California, USA
William J. Greenleaf
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
3Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
Howard Y. Chang
1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, California, USA
2Department of Dermatology, Stanford University School of Medicine, Stanford, California, USA
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Posted August 26, 2017.
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton G. Greenside, Nicholas A. Sinnott-Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang
bioRxiv 181206; doi: https://doi.org/10.1101/181206
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton G. Greenside, Nicholas A. Sinnott-Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang
bioRxiv 181206; doi: https://doi.org/10.1101/181206
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