RT Journal Article
SR Electronic
T1 Bias and measurement error in comparative analyses: A case study with the Ornstein Uhlenbeck model
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 004036
DO 10.1101/004036
A1 Gavin H. Thomas
A1 Natalie Cooper
A1 Chris Venditti
A1 Andrew Meade
A1 Rob P. Freckleton
YR 2014
UL http://biorxiv.org/content/early/2014/04/09/004036.abstract
AB Phylogenetic comparative methods are increasingly used to give new insight into variation, causes and consequences of trait variation among species. The foundation of these methods is a suite of models that attempt to capture evolutionary patterns by extending the Brownian constant variance model. However, the parameters of these models have been hypothesised to be biased and only asymptotically behave in a statistically predictable way as datasets become large. This does not seem to be widely appreciated. We show that a commonly used model in evolutionary biology (the Ornstein-Uhlenbeck model) is biased over a wide range of conditions. Many studies fitting this model use datasets that are small and prone to substantial biases. Our results suggest that simulating fitted models and comparing with empirical results is critical when fitting OU and other extensions of the Brownian model.