RT Journal Article
SR Electronic
T1 <kbd>RADpainter</kbd> and <kbd>fineRADstructure:</kbd> population inference from RADseq data
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 057711
DO 10.1101/057711
A1 Milan Malinsky
A1 Emiliano Trucchi
A1 Daniel John Lawson
A1 Daniel Falush
YR 2016
UL http://biorxiv.org/content/early/2016/06/16/057711.abstract
AB Powerful approaches to inferring recent or current population structure based on nearest neighbor haplotype ‘coancestry’ have so far been inaccessible to users without high quality genome-wide haplotypes. With a boom in non-model organism genomics, there is a pressing need to bring these approaches to communities without access to such data. Here we present RADpainter, a new program designed to infer the coancestry matrix from restriction-site-associated DNA sequencing (RADseq) data. We combine this program together with a previously published MCMC clustering algorithm into fineRADstructure - a complete, easy to use, and fast population inference package for RADseq data (https://github.com/millanek/fineRADstructure).