TY - JOUR T1 - QuPath: Open source software for digital pathology image analysis JF - bioRxiv DO - 10.1101/099796 SP - 099796 AU - Peter Bankhead AU - Maurice B Loughrey AU - José A Fernández AU - Yvonne Dombrowski AU - Darragh G McArt AU - Philip D Dunne AU - Stephen McQuaid AU - Ronan T Gray AU - Liam J Murray AU - Helen G Coleman AU - Jacqueline A James AU - Manuel Salto-Tellez AU - Peter W Hamilton Y1 - 2017/01/01 UR - http://biorxiv.org/content/early/2017/01/12/099796.abstract N2 - QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design make it suitable for a wide range of additional image analysis applications across biomedical research. ER -