RT Journal Article
SR Electronic
T1 Phandango: an interactive viewer for bacterial population genomics
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 119545
DO 10.1101/119545
A1 James Hadfield
A1 Nicholas J. Croucher
A1 Richard J Goater
A1 Khalil Abudahab
A1 David M Aanensen
A1 Simon R. Harris
YR 2017
UL http://biorxiv.org/content/early/2017/03/22/119545.abstract
AB Summary Fully exploiting the wealth of data in current bacterial population genomics datasets requires synthesising and integrating different types of analysis across millions of base pairs in hundreds or thousands of isolates. Current approaches often use static representations of phylogenetic, epidemiological, statistical and evolutionary analysis results that are difficult to relate to one another. Phandango is an interactive application running in a web browser allowing fast exploration of large-scale population genomics datasets combining the output from multiple genomic analysis methods in an intuitive and interactive manner.Availability Phandango is a web application freely available for use at https://jameshadfield.github.io/phandango and includes a diverse collection of datasets as examples. Source code together with a detailed wiki page is available on GitHub at https://github.com/jameshadfield/phandangoContact jh22{at}sanger.ac.uk, sh16{at}sanger.ac.uk