RT Journal Article
SR Electronic
T1 Parameter estimation in mathematical models of viral infections using R
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 130674
DO 10.1101/130674
A1 Van Kinh Nguyen
A1 Esteban A. Hernandez-Vargas
YR 2017
UL http://biorxiv.org/content/early/2017/04/25/130674.abstract
AB In recent years, mathematical modeling approaches have played a central role to understand and to quantify mechanisms in different viral infectious diseases. In this approach, biological-based hypotheses are expressed via mathematical relations and then tested based on empirical data. The simulation results can be used to either identify underlying mechanisms, provide predictions on infection outcomes, or evaluate the efficacy of a treatment.Conducting parameter estimation for mathematical models is not an easy task. Here we detail an approach to conduct parameter estimation and to evaluate the results using the free software R. The method is applicable to influenza virus dynamics at different complexity levels, widening experimentalists capabilities in understanding their data. The parameter estimation approach presented here can be also applied to other viral infections or biological applications.