RT Journal Article SR Electronic T1 A complete electron microscopy volume of the brain of adult Drosophila melanogaster JF bioRxiv FD Cold Spring Harbor Laboratory SP 140905 DO 10.1101/140905 A1 Zhihao Zheng A1 J. Scott Lauritzen A1 Eric Perlman A1 Camenzind G. Robinson A1 Matthew Nichols A1 Daniel Milkie A1 Omar Torrens A1 John Price A1 Corey B. Fisher A1 Nadiya Sharifi A1 Steven A. Calle-Schuler A1 Lucia Kmecova A1 Iqbal J. Ali A1 Bill Karsh A1 Eric T. Trautman A1 John Bogovic A1 Philipp Hanslovsky A1 Gregory S. X. E. Jefferis A1 Michael Kazhdan A1 Khaled Khairy A1 Stephan Saalfeld A1 Richard D. Fetter A1 Davi D. Bock YR 2017 UL http://biorxiv.org/content/early/2017/05/22/140905.abstract AB Drosophila melanogaster has a rich repertoire of innate and learned behaviors. Its 100,000–neuron brain is a large but tractable target for comprehensive neural circuit mapping. Only electron microscopy (EM) enables complete, unbiased mapping of synaptic connectivity; however, the fly brain is too large for conventional EM. We developed a custom high-throughput EM platform and imaged the entire brain of an adult female fly. We validated the dataset by tracing brain-spanning circuitry involving the mushroom body (MB), intensively studied for its role in learning. Here we describe the complete set of olfactory inputs to the MB; find a new cell type providing driving input to Kenyon cells (the intrinsic MB neurons); identify neurons postsynaptic to Kenyon cell dendrites; and find that axonal arbors providing input to the MB calyx are more tightly clustered than previously indicated by light-level data. This freely available EM dataset will significantly accelerate Drosophila neuroscience.HIGHLIGHTS- A complete adult fruit fly brain was imaged, using electron microscopy (EM)- The EM volume enables brain-spanning mapping of neuronal circuits at the synaptic level- Olfactory projection neurons cluster more tightly in mushroom body calyx than expected from light-level data- The primary postsynaptic targets of Kenyon cells (KCs) in the MB are other KCs, as well as the anterior paired lateral (APL) neuron- A newly discovered cell type, MB-CP2, integrates input from several sensory modalities and provides microglomerular input to KCs in MB calyx- A software pipeline was created in which EM-traced skeletons can be searched for within existing large-scale light microscopy (LM) databases of neuronal morphology, facilitating cell type identification and discovery of relevant genetic driver lines