@article {Silva147496, author = {Tiago Chedraoui Silva and Antonio Colaprico and Catharina Olsen and Gianluca Bontempi and Michele Ceccarelli and Benjamin P. Berman and Houtan Noushmehr}, title = {TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data}, elocation-id = {147496}, year = {2017}, doi = {10.1101/147496}, publisher = {Cold Spring Harbor Laboratory}, abstract = {Summary The GDC (Genomic Data Commons) data portal provides users with data from cancer genomics studies. Recently, we developed the R/Bioconductor TCGAbiolinks package, which allows users to search, download and prepare cancer genomics data for integrative data analysis. The use of this package requires users to have advanced knowledge of R thus limiting the number of users. To overcome this obstacle and improve the accessibility of the package by a wider range of users, we developed a graphical user interface (GUI) available through the R/Bioconductor package TCGAbiolinksGUI. Availability: The TCGAbiolinksGUI package is freely available within the Bioconductor project at http://bioconductor.org/packages/TCGAbiolinksGUI/.And a demo version is available at https://tcgabiolinksgui.shinyapps.io/demo/ and a docker image is available at https://hub.docker.com/r/tiagochst/tcgabiolinksgui/.Contact hnoushm1{at}hfhs.orgSupplementary information Supplementary information is available at http://bit.do/TCGAbiolinksDocs}, URL = {https://www.biorxiv.org/content/early/2017/06/08/147496}, eprint = {https://www.biorxiv.org/content/early/2017/06/08/147496.full.pdf}, journal = {bioRxiv} }