RT Journal Article
SR Electronic
T1 TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 147496
DO 10.1101/147496
A1 Tiago Chedraoui Silva
A1 Antonio Colaprico
A1 Catharina Olsen
A1 Gianluca Bontempi
A1 Michele Ceccarelli
A1 Benjamin P. Berman
A1 Houtan Noushmehr
YR 2017
UL http://biorxiv.org/content/early/2017/06/08/147496.abstract
AB Summary The GDC (Genomic Data Commons) data portal provides users with data from cancer genomics studies. Recently, we developed the R/Bioconductor TCGAbiolinks package, which allows users to search, download and prepare cancer genomics data for integrative data analysis. The use of this package requires users to have advanced knowledge of R thus limiting the number of users. To overcome this obstacle and improve the accessibility of the package by a wider range of users, we developed a graphical user interface (GUI) available through the R/Bioconductor package TCGAbiolinksGUI. Availability: The TCGAbiolinksGUI package is freely available within the Bioconductor project at http://bioconductor.org/packages/TCGAbiolinksGUI/.And a demo version is available at https://tcgabiolinksgui.shinyapps.io/demo/ and a docker image is available at https://hub.docker.com/r/tiagochst/tcgabiolinksgui/.Contact hnoushm1{at}hfhs.orgSupplementary information Supplementary information is available at http://bit.do/TCGAbiolinksDocs