%0 Journal Article %A Swati Parekh %A Christoph Ziegenhain %A Beate Vieth %A Wolfgang Enard %A Ines Hellmann %T zUMIs %B A fast and flexible pipeline to process RNA sequencing data with UMIs %D 2017 %R 10.1101/153940 %J bioRxiv %P 153940 %X RNA sequencing is increasingly performed with less starting material and at a higher sample throughput, e.g. to analyse single-cell transcriptomes. In this context, unique molecular identifiers (UMIs) are used to reduce amplification noise and sample-specific barcodes are used to track libraries. Here, we present a fast and flexible pipeline to process data from such RNA-seq protocols.Availability: https://github.com/sdparekh/zUMIs %U https://www.biorxiv.org/content/biorxiv/early/2017/06/22/153940.full.pdf