@article {Murray160606, author = {Kevin D. Murray and Justin O. Borevitz}, title = {Axe: rapid, competitive sequence read demultiplexing using a trie}, elocation-id = {160606}, year = {2017}, doi = {10.1101/160606}, publisher = {Cold Spring Harbor Laboratory}, abstract = {Here we implement a rapid algorithm for demultiplexing DNA sequence reads with in-read indices. Axe selects the optimal index present in a sequence read, even in the presence of sequencing errors. The algorithm is able to handle combinatorial indexing, indices of differing length, and several mismatches per index sequence.}, URL = {https://www.biorxiv.org/content/early/2017/07/07/160606}, eprint = {https://www.biorxiv.org/content/early/2017/07/07/160606.full.pdf}, journal = {bioRxiv} }