RT Journal Article SR Electronic T1 Axe: rapid, competitive sequence read demultiplexing using a trie JF bioRxiv FD Cold Spring Harbor Laboratory SP 160606 DO 10.1101/160606 A1 Kevin D. Murray A1 Justin O. Borevitz YR 2017 UL http://biorxiv.org/content/early/2017/07/07/160606.abstract AB Here we implement a rapid algorithm for demultiplexing DNA sequence reads with in-read indices. Axe selects the optimal index present in a sequence read, even in the presence of sequencing errors. The algorithm is able to handle combinatorial indexing, indices of differing length, and several mismatches per index sequence.