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Year Number of Results
2015 1
2016 1
2017 4
2018 2
2019 5
2020 5
2021 3
2022 2
2023 3
2024 1

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24 results

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Page 1
Ultra-long-range interactions between active regulatory elements.
Friman ET, Flyamer IM, Marenduzzo D, Boyle S, Bickmore WA. Friman ET, et al. Among authors: flyamer im. Genome Res. 2023 Aug;33(8):1269-1283. doi: 10.1101/gr.277567.122. Epub 2023 Jul 14. Genome Res. 2023. PMID: 37451823 Free PMC article.
Trisomies Reorganize Human 3D Genome.
Zhegalova IV, Vasiluev PA, Flyamer IM, Shtompel AS, Glazyrina E, Shilova N, Minzhenkova M, Markova Z, Petrova NV, Dashinimaev EB, Razin SV, Ulianov SV. Zhegalova IV, et al. Among authors: flyamer im. Int J Mol Sci. 2023 Nov 7;24(22):16044. doi: 10.3390/ijms242216044. Int J Mol Sci. 2023. PMID: 38003233 Free PMC article.
MCM complexes are barriers that restrict cohesin-mediated loop extrusion.
Dequeker BJH, Scherr MJ, Brandão HB, Gassler J, Powell S, Gaspar I, Flyamer IM, Lalic A, Tang W, Stocsits R, Davidson IF, Peters JM, Duderstadt KE, Mirny LA, Tachibana K. Dequeker BJH, et al. Among authors: flyamer im. Nature. 2022 Jun;606(7912):197-203. doi: 10.1038/s41586-022-04730-0. Epub 2022 May 18. Nature. 2022. PMID: 35585235 Free PMC article.
Pairtools: from sequencing data to chromosome contacts.
Open2C; Abdennur N, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Venev SV. Open2C, et al. Among authors: flyamer im. bioRxiv [Preprint]. 2023 Feb 15:2023.02.13.528389. doi: 10.1101/2023.02.13.528389. bioRxiv. 2023. PMID: 36824968 Free PMC article. Preprint.
Coolpup.py: versatile pile-up analysis of Hi-C data.
Flyamer IM, Illingworth RS, Bickmore WA. Flyamer IM, et al. Bioinformatics. 2020 May 1;36(10):2980-2985. doi: 10.1093/bioinformatics/btaa073. Bioinformatics. 2020. PMID: 32003791 Free PMC article.
Single-nucleus Hi-C of mammalian oocytes and zygotes.
Gassler J, Flyamer IM, Tachibana K. Gassler J, et al. Among authors: flyamer im. Methods Cell Biol. 2018;144:389-407. doi: 10.1016/bs.mcb.2018.03.032. Epub 2018 Apr 30. Methods Cell Biol. 2018. PMID: 29804679
Cohesin is required for long-range enhancer action at the Shh locus.
Kane L, Williamson I, Flyamer IM, Kumar Y, Hill RE, Lettice LA, Bickmore WA. Kane L, et al. Among authors: flyamer im. Nat Struct Mol Biol. 2022 Sep;29(9):891-897. doi: 10.1038/s41594-022-00821-8. Epub 2022 Sep 12. Nat Struct Mol Biol. 2022. PMID: 36097291 Free PMC article.
Order and stochasticity in the folding of individual Drosophila genomes.
Ulianov SV, Zakharova VV, Galitsyna AA, Kos PI, Polovnikov KE, Flyamer IM, Mikhaleva EA, Khrameeva EE, Germini D, Logacheva MD, Gavrilov AA, Gorsky AS, Nechaev SK, Gelfand MS, Vassetzky YS, Chertovich AV, Shevelyov YY, Razin SV. Ulianov SV, et al. Among authors: flyamer im. Nat Commun. 2021 Jan 4;12(1):41. doi: 10.1038/s41467-020-20292-z. Nat Commun. 2021. PMID: 33397980 Free PMC article.
Bioframe: operations on genomic intervals in Pandas dataframes.
Open2C; Abdennur N, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Venev S. Open2C, et al. Among authors: flyamer im. Bioinformatics. 2024 Feb 1;40(2):btae088. doi: 10.1093/bioinformatics/btae088. Bioinformatics. 2024. PMID: 38402507 Free PMC article.
24 results