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Page 1
Epigenetic Ratchet: Spontaneous Adaptation via Stochastic Gene Expression.
Sci Rep. 2020 Jan 16;10(1):459. doi: 10.1038/s41598-019-57372-0.
Sci Rep. 2020.
PMID: 31949247
Free PMC article.
When to wake up? The optimal waking-up strategies for starvation-induced persistence.
Himeoka Y, Mitarai N.
Himeoka Y, et al.
PLoS Comput Biol. 2021 Feb 11;17(2):e1008655. doi: 10.1371/journal.pcbi.1008655. eCollection 2021 Feb.
PLoS Comput Biol. 2021.
PMID: 33571191
Free PMC article.
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Distinct Survival, Growth Lag, and rRNA Degradation Kinetics during Long-Term Starvation for Carbon or Phosphate.
Himeoka Y, Gummesson B, Sørensen MA, Svenningsen SL, Mitarai N.
Himeoka Y, et al.
mSphere. 2022 Jun 29;7(3):e0100621. doi: 10.1128/msphere.01006-21. Epub 2022 Apr 20.
mSphere. 2022.
PMID: 35440180
Free PMC article.
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Evolution of hierarchy and irreversibility in theoretical cell differentiation model.
Nakamura YT, Himeoka Y, Saito N, Furusawa C.
Nakamura YT, et al. Among authors: himeoka y.
PNAS Nexus. 2023 Dec 22;3(1):pgad454. doi: 10.1093/pnasnexus/pgad454. eCollection 2024 Jan.
PNAS Nexus. 2023.
PMID: 38205032
Free PMC article.
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Modeling slow-processing of toxin messenger RNAs in type-I toxin-antitoxin systems: post-segregational killing and noise filtering.
Himeoka Y, Mitarai N.
Himeoka Y, et al.
Phys Biol. 2019 Jan 4;16(2):026001. doi: 10.1088/1478-3975/aaf3e3.
Phys Biol. 2019.
PMID: 30523873
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Entropy production of a steady-growth cell with catalytic reactions.
Himeoka Y, Kaneko K.
Himeoka Y, et al.
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Oct;90(4):042714. doi: 10.1103/PhysRevE.90.042714. Epub 2014 Oct 15.
Phys Rev E Stat Nonlin Soft Matter Phys. 2014.
PMID: 25375530
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Enzyme oscillation can enhance the thermodynamic efficiency of cellular metabolism: consequence of anti-phase coupling between reaction flux and affinity.
Himeoka Y, Kaneko K.
Himeoka Y, et al.
Phys Biol. 2016 Apr 5;13(2):026002. doi: 10.1088/1478-3975/13/2/026002.
Phys Biol. 2016.
PMID: 27046041
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