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Drug-food Interactions in the Era of Molecular Big Data, Machine Intelligence, and Personalized Health.
Roy R, Marakkar S, Vayalil MP, Shahanaz A, Anil AP, Kunnathpeedikayil S, Rawal I, Shetty K, Shameer Z, Sathees S, Prasannakumar AP, Mathew OK, Subramanian L, Shameer K, Yadav KK. Roy R, et al. Among authors: mathew ok. Recent Adv Food Nutr Agric. 2022 Nov 14;13(1):27-50. doi: 10.2174/2212798412666220620104809. Recent Adv Food Nutr Agric. 2022. PMID: 36173075 Free PMC article. Review.
LenVarDB: database of length-variant protein domains.
Mutt E, Mathew OK, Sowdhamini R. Mutt E, et al. Among authors: mathew ok. Nucleic Acids Res. 2014 Jan;42(Database issue):D246-50. doi: 10.1093/nar/gkt1014. Epub 2013 Nov 4. Nucleic Acids Res. 2014. PMID: 24194591 Free PMC article.
The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins.
Suryamohan K, Krishnankutty SP, Guillory J, Jevit M, Schröder MS, Wu M, Kuriakose B, Mathew OK, Perumal RC, Koludarov I, Goldstein LD, Senger K, Dixon MD, Velayutham D, Vargas D, Chaudhuri S, Muraleedharan M, Goel R, Chen YJ, Ratan A, Liu P, Faherty B, de la Rosa G, Shibata H, Baca M, Sagolla M, Ziai J, Wright GA, Vucic D, Mohan S, Antony A, Stinson J, Kirkpatrick DS, Hannoush RN, Durinck S, Modrusan Z, Stawiski EW, Wiley K, Raudsepp T, Kini RM, Zachariah A, Seshagiri S. Suryamohan K, et al. Among authors: mathew ok. Nat Genet. 2020 Jan;52(1):106-117. doi: 10.1038/s41588-019-0559-8. Epub 2020 Jan 6. Nat Genet. 2020. PMID: 31907489 Free PMC article.
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation.
Shafi KM, Joshi AG, Meenakshi I, Pasha SN, Harini K, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Shafi KM, et al. Among authors: mathew ok. Data Brief. 2020 Mar 20;30:105416. doi: 10.1016/j.dib.2020.105416. eCollection 2020 Jun. Data Brief. 2020. PMID: 32309524 Free PMC article.
A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways.
Joshi AG, Harini K, Meenakshi I, Shafi KM, Pasha SN, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R. Joshi AG, et al. Among authors: mathew ok. MethodsX. 2020 Sep 2;7:101053. doi: 10.1016/j.mex.2020.101053. eCollection 2020. MethodsX. 2020. PMID: 33024710 Free PMC article.
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