Canine urothelial carcinoma: genomically aberrant and comparatively relevant

…, T Liu, D Albertson, M Ruvolo, A Bergstrom Lucas… - Chromosome …, 2015 - Springer
Urothelial carcinoma (UC), also referred to as transitional cell carcinoma (TCC), is the most
common bladder malignancy in both human and canine populations. In human UC, …

The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements.

…, S Amur, W Bao, CC Barbacioru, AB Lucas… - Nature …, 2006 - europepmc.org
Over the last decade, the introduction of microarray technology has had a profound impact
on gene expression research. The publication of studies with dissimilar or altogether …

lincRNAs act in the circuitry controlling pluripotency and differentiation

…, M Garber, JK Grenier, G Munson, G Young, AB Lucas… - Nature, 2011 - nature.com
Although thousands of large intergenic non-coding RNAs (lincRNAs) have been identified
in mammals, few have been functionally characterized, leading to debate about their …

[HTML][HTML] Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue

…, A Mikheenko, N Belchikov, J Jarroux, AB Lucas… - Nature …, 2022 - nature.com
Single-nuclei RNA sequencing characterizes cell types at the gene level. However, compared
to single-cell approaches, many single-nuclei cDNAs are purely intronic, lack barcodes …

Using RNA sample titrations to assess microarray platform performance and normalization techniques

…, RA Setterquist, M Wilson, AB Lucas… - Nature …, 2006 - nature.com
We have assessed the utility of RNA titration samples for evaluating microarray platform
performance and the impact of different normalization methods on the results obtained. As part …

[HTML][HTML] Global transcriptional response to CRISPR/Cas9-AAV6-based genome editing in CD34+ hematopoietic stem and progenitor cells

…, S Vaidyanathan, DE Ryan, B Curry, AB Lucas… - Molecular Therapy, 2018 - cell.com
Genome-editing technologies are currently being translated to the clinic. However, cellular
effects of the editing machinery have yet to be fully elucidated. Here, we performed global …

Evaluation of external RNA controls for the assessment of microarray performance

W Tong, AB Lucas, R Shippy, X Fan, H Fang… - Nature …, 2006 - nature.com
External RNA controls (ERCs), although important for microarray assay performance assessment,
have yet to be fully implemented in the research community. As part of the MicroArray …

[HTML][HTML] A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

…, K Wilkins, M Chierici, W Bao, LS Basehore, AB Lucas… - Genome biology, 2021 - Springer
Background Oncopanel genomic testing, which identifies important somatic variants, is
increasingly common in medical practice and especially in clinical trials. Currently, there is a …

[HTML][HTML] Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

…, H Arib, C Attwooll, K Babson, L Bao, W Bao, AB Lucas… - Genome biology, 2021 - Springer
Background Targeted sequencing using oncopanels requires comprehensive assessments
of accuracy and detection sensitivity to ensure analytical validity. By employing reference …

[HTML][HTML] Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design

…, SA Munro, JR Parsons, J McDaniel, AB Lucas… - BMC …, 2016 - Springer
Background Highly multiplexed assays for quantitation of RNA transcripts are being used in
many areas of biology and medicine. Using data generated by these transcriptomic assays …