Canine urothelial carcinoma: genomically aberrant and comparatively relevant
…, T Liu, D Albertson, M Ruvolo, A Bergstrom Lucas… - Chromosome …, 2015 - Springer
Urothelial carcinoma (UC), also referred to as transitional cell carcinoma (TCC), is the most
common bladder malignancy in both human and canine populations. In human UC, …
common bladder malignancy in both human and canine populations. In human UC, …
The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements.
…, S Amur, W Bao, CC Barbacioru, AB Lucas… - Nature …, 2006 - europepmc.org
Over the last decade, the introduction of microarray technology has had a profound impact
on gene expression research. The publication of studies with dissimilar or altogether …
on gene expression research. The publication of studies with dissimilar or altogether …
lincRNAs act in the circuitry controlling pluripotency and differentiation
…, M Garber, JK Grenier, G Munson, G Young, AB Lucas… - Nature, 2011 - nature.com
Although thousands of large intergenic non-coding RNAs (lincRNAs) have been identified
in mammals, few have been functionally characterized, leading to debate about their …
in mammals, few have been functionally characterized, leading to debate about their …
[HTML][HTML] Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
…, A Mikheenko, N Belchikov, J Jarroux, AB Lucas… - Nature …, 2022 - nature.com
Single-nuclei RNA sequencing characterizes cell types at the gene level. However, compared
to single-cell approaches, many single-nuclei cDNAs are purely intronic, lack barcodes …
to single-cell approaches, many single-nuclei cDNAs are purely intronic, lack barcodes …
Using RNA sample titrations to assess microarray platform performance and normalization techniques
…, RA Setterquist, M Wilson, AB Lucas… - Nature …, 2006 - nature.com
We have assessed the utility of RNA titration samples for evaluating microarray platform
performance and the impact of different normalization methods on the results obtained. As part …
performance and the impact of different normalization methods on the results obtained. As part …
[HTML][HTML] Global transcriptional response to CRISPR/Cas9-AAV6-based genome editing in CD34+ hematopoietic stem and progenitor cells
…, S Vaidyanathan, DE Ryan, B Curry, AB Lucas… - Molecular Therapy, 2018 - cell.com
Genome-editing technologies are currently being translated to the clinic. However, cellular
effects of the editing machinery have yet to be fully elucidated. Here, we performed global …
effects of the editing machinery have yet to be fully elucidated. Here, we performed global …
Evaluation of external RNA controls for the assessment of microarray performance
External RNA controls (ERCs), although important for microarray assay performance assessment,
have yet to be fully implemented in the research community. As part of the MicroArray …
have yet to be fully implemented in the research community. As part of the MicroArray …
[HTML][HTML] A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency
…, K Wilkins, M Chierici, W Bao, LS Basehore, AB Lucas… - Genome biology, 2021 - Springer
Background Oncopanel genomic testing, which identifies important somatic variants, is
increasingly common in medical practice and especially in clinical trials. Currently, there is a …
increasingly common in medical practice and especially in clinical trials. Currently, there is a …
[HTML][HTML] Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions
…, H Arib, C Attwooll, K Babson, L Bao, W Bao, AB Lucas… - Genome biology, 2021 - Springer
Background Targeted sequencing using oncopanels requires comprehensive assessments
of accuracy and detection sensitivity to ensure analytical validity. By employing reference …
of accuracy and detection sensitivity to ensure analytical validity. By employing reference …
[HTML][HTML] Evaluation of the External RNA Controls Consortium (ERCC) reference material using a modified Latin square design
…, SA Munro, JR Parsons, J McDaniel, AB Lucas… - BMC …, 2016 - Springer
Background Highly multiplexed assays for quantitation of RNA transcripts are being used in
many areas of biology and medicine. Using data generated by these transcriptomic assays …
many areas of biology and medicine. Using data generated by these transcriptomic assays …