User profiles for A. Lugowski
Adam LugowskiUniversity of California, Santa Barbara Verified email at cs.ucsb.edu Cited by 221 |
A comprehensive survey of C. elegans argonaute proteins reveals organism-wide gene regulatory networks and functions
Argonaute (AGO) proteins associate with small RNAs to direct their effector function on
complementary transcripts. The nematode Caenorhabditis elegans contains an expanded family …
complementary transcripts. The nematode Caenorhabditis elegans contains an expanded family …
Text similarity in vector space models: a comparative study
O Shahmirzadi, A Lugowski… - 2019 18th IEEE …, 2019 - ieeexplore.ieee.org
Automatic measurement of semantic text similarity is an important task in natural language
processing. In this paper, we evaluate the performance of different vector space models to …
processing. In this paper, we evaluate the performance of different vector space models to …
ME31B globally represses maternal mRNAs by two distinct mechanisms during the Drosophila maternal-to-zygotic transition
M Wang, M Ly, A Lugowski, JD Laver, HD Lipshitz… - Elife, 2017 - elifesciences.org
10.7554/eLife.27891.001 In animal embryos, control of development is passed from
exclusively maternal gene products to those encoded by the embryonic genome in a process …
exclusively maternal gene products to those encoded by the embryonic genome in a process …
[HTML][HTML] Determining mRNA half-lives on a transcriptome-wide scale
A Lugowski, B Nicholson, OS Rissland - Methods, 2018 - Elsevier
Every step in the life cycle of an RNA transcript provides opportunity for regulation. One
important aspect of post-transcriptional control is the regulation of RNA stability. Of the many …
important aspect of post-transcriptional control is the regulation of RNA stability. Of the many …
A flexible open-source toolbox for scalable complex graph analysis
The Knowledge Discovery Toolbox (KDT) enables domain experts to perform complex analyses
of huge datasets on supercomputers using a high-level language without grappling with …
of huge datasets on supercomputers using a high-level language without grappling with …
[HTML][HTML] The influence of microRNAs and poly (A) tail length on endogenous mRNA–protein complexes
OS Rissland, AO Subtelny, M Wang, A Lugowski… - Genome biology, 2017 - Springer
Background All mRNAs are bound in vivo by proteins to form mRNA–protein complexes (mRNPs),
but changes in the composition of mRNPs during posttranscriptional regulation …
but changes in the composition of mRNPs during posttranscriptional regulation …
DRUID: a pipeline for transcriptome-wide measurements of mRNA stability
A Lugowski, B Nicholson, OS Rissland - Rna, 2018 - rnajournal.cshlp.org
Control of messenger RNA (mRNA) stability is an important aspect of gene regulation. The
gold standard for measuring mRNA stability transcriptome-wide uses metabolic labeling, …
gold standard for measuring mRNA stability transcriptome-wide uses metabolic labeling, …
Phosphoproteomic network analysis in the sea urchin Strongylocentrotus purpuratus reveals new candidates in egg activation
…, AE Garcia‐Vedrenne, R Isserlin, A Lugowski… - …, 2015 - Wiley Online Library
Fertilization triggers a dynamic symphony of molecular transformations induced by a rapid
rise in intracellular calcium. Most prominent are surface alterations, metabolic activation, …
rise in intracellular calcium. Most prominent are surface alterations, metabolic activation, …
Application of Fenton's reagent and activated carbon for removal of nitrification inhibitors
J Kochany, A Lugowski - Environmental technology, 1998 - Taylor & Francis
The subject of this treatability study was groundwater polluted with ammonia (up to 300 mg l
−1 ) and a number of organic contaminants known to be inhibitors of nitrification. During this …
−1 ) and a number of organic contaminants known to be inhibitors of nitrification. During this …
Combined biological and membrane treatment of food-processing wastewater to achieve dry-ditch criteria: pilot and full-scale performance
G Nakhla, A Lugowski, J Patel, V Rivest - Bioresource technology, 2006 - Elsevier
This study tested the applicability of a submerged vacuum ultrafiltration membrane technology
in combination with the biological treatment system to achieve dry-ditch criteria stipulated …
in combination with the biological treatment system to achieve dry-ditch criteria stipulated …