Cloud computing for genomic data analysis and collaboration

B Langmead, A Nellore - Nature Reviews Genetics, 2018 - nature.com
Next-generation sequencing has made major strides in the past decade. Studies based on
large sequencing data sets are growing in number, and public archives for raw sequencing …

Human leukocyte antigen susceptibility map for severe acute respiratory syndrome coronavirus 2

…, SK Maden, MA Wood, BR Weeder, A Nellore… - Journal of …, 2020 - Am Soc Microbiol
Genetic variability across the three major histocompatibility complex (MHC) class I genes (human
leukocyte antigen A [HLA-A], -B, and -C genes) may affect susceptibility to and severity …

[PDF][PDF] Oncogenic BRAF regulates oxidative metabolism via PGC1α and MITF

…, GC Rowe, DT Frederick, AD Hurley, A Nellore… - Cancer cell, 2013 - cell.com
Activating mutations in BRAF are the most common genetic alterations in melanoma. Inhibition
of BRAF by small molecules leads to cell-cycle arrest and apoptosis. We show here that …

The Growth Kinetics of TiO2 Nanoparticles from Titanium(IV) Alkoxide at High Water/Titanium Ratio

G Oskam, A Nellore, RL Penn… - The Journal of Physical …, 2003 - ACS Publications
We report on the growth kinetics of TiO 2 nanoparticles synthesized from aqueous solution
using titanium(IV) isopropoxide as precursor. The radius of primary particles was found to be …

Reproducible RNA-seq analysis using recount2

L Collado-Torres, A Nellore, K Kammers, SE Ellis… - Nature …, 2017 - nature.com
The advantage of using the recount2 version of GTEx data is that all data are identically
processed, therefore enabling integrated analyses of multiple datasets. To illustrate how …

Mimicking the QCD equation of state with a dual black hole

SS Gubser, A Nellore - Physical Review D, 2008 - APS
We present numerical and analytical studies of the equation of state of translationally
invariant black hole solutions to five-dimensional gravity coupled to a single scalar. As an …

Thermodynamics and bulk viscosity of approximate black hole duals to finite temperature quantum chromodynamics

SS Gubser, A Nellore, SS Pufu, FD Rocha - Physical review letters, 2008 - APS
We consider classes of translationally invariant black hole solutions whose equations of
state closely resemble that of QCD at zero chemical potential. We use these backgrounds to …

[HTML][HTML] recount3: summaries and queries for large-scale RNA-seq expression and splicing

…, D Zhang, L Joseph, JT Leek, AE Jaffe, A Nellore… - Genome biology, 2021 - Springer
We present recount3, a resource consisting of over 750,000 publicly available human and
mouse RNA sequencing (RNA-seq) samples uniformly processed by our new Monorail …

[PDF][PDF] Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo

AD Ramos, A Diaz, A Nellore, RN Delgado, KY Park… - Cell stem cell, 2013 - cell.com
Long noncoding RNAs (lncRNAs) have been described in cell lines and various whole
tissues, but lncRNA analysis of development in vivo is limited. Here, we comprehensively …

Ground states of holographic superconductors

SS Gubser, A Nellore - Physical Review D, 2009 - APS
We investigate the ground states of the Abelian Higgs model in AdS 4 with various choices
of parameters, and with no deformations in the ultraviolet other than a chemical potential for …