User profiles for B. H. Good
Benjamin H GoodAssistant Professor of Applied Physics, Stanford University Verified email at stanford.edu Cited by 3441 |
Performance of modularity maximization in practical contexts
… That is, without external information, it becomes unclear which particular partition, within the
enormous number of roughly equally good ones, is more scientifically meaningful 26 . And, …
enormous number of roughly equally good ones, is more scientifically meaningful 26 . And, …
The dynamics of molecular evolution over 60,000 generations
The outcomes of evolution are determined by a stochastic dynamical process that governs
how mutations arise and spread through a population. However, it is difficult to observe these …
how mutations arise and spread through a population. However, it is difficult to observe these …
[HTML][HTML] Evolutionary dynamics of bacteria in the gut microbiome within and across hosts
Gut microbiota are shaped by a combination of ecological and evolutionary forces. While
the ecological dynamics have been extensively studied, much less is known about how …
the ecological dynamics have been extensively studied, much less is known about how …
Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations
… Ultimately, this intuition can only be justified a posteriori by the generally good agreement
between our analytical results and computer simulations discussed below. A more thorough …
between our analytical results and computer simulations discussed below. A more thorough …
The effect of strong purifying selection on genetic diversity
Negative selection is a ubiquitous evolutionary force, but its effects on diversity in large
samples are poorly understood. Cvijović, Good, and Desai obtain simple analytical expressions …
samples are poorly understood. Cvijović, Good, and Desai obtain simple analytical expressions …
Fate of a mutation in a fluctuating environment
Natural environments are never truly constant, but the evolutionary implications of temporally
varying selection pressures remain poorly understood. Here we investigate how the fate of …
varying selection pressures remain poorly understood. Here we investigate how the fate of …
[HTML][HTML] Genetic diversity in the interference selection limit
… In addition, the traditional measure of the deleterious load ceases to be a good predictor of
diversity in the interference selection regime, with more than an order of magnitude variation …
diversity in the interference selection regime, with more than an order of magnitude variation …
The impact of macroscopic epistasis on long-term evolutionary dynamics
Genetic interactions can strongly influence the fitness effects of individual mutations, yet the
impact of these epistatic interactions on evolutionary dynamics remains poorly understood. …
impact of these epistatic interactions on evolutionary dynamics remains poorly understood. …
Competition for fluctuating resources reproduces statistics of species abundance over time across wide-ranging microbiotas
Across diverse microbiotas, species abundances vary in time with distinctive statistical
behaviors that appear to generalize across hosts, but the origins and implications of these …
behaviors that appear to generalize across hosts, but the origins and implications of these …
Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment
Gut microbial communities can respond to antibiotic perturbations by rapidly altering their
taxonomic and functional composition. However, little is known about the strain-level …
taxonomic and functional composition. However, little is known about the strain-level …