User profiles for B. H. Good

Benjamin H Good

Assistant Professor of Applied Physics, Stanford University
Verified email at stanford.edu
Cited by 3441

Performance of modularity maximization in practical contexts

BH Good, YA De Montjoye, A Clauset - Physical review E, 2010 - APS
… That is, without external information, it becomes unclear which particular partition, within the
enormous number of roughly equally good ones, is more scientifically meaningful 26 . And, …

The dynamics of molecular evolution over 60,000 generations

BH Good, MJ McDonald, JE Barrick, RE Lenski… - Nature, 2017 - nature.com
The outcomes of evolution are determined by a stochastic dynamical process that governs
how mutations arise and spread through a population. However, it is difficult to observe these …

[HTML][HTML] Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

NR Garud, BH Good, O Hallatschek, KS Pollard - PLoS biology, 2019 - journals.plos.org
Gut microbiota are shaped by a combination of ecological and evolutionary forces. While
the ecological dynamics have been extensively studied, much less is known about how …

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

BH Good, IM Rouzine, DJ Balick… - Proceedings of the …, 2012 - National Acad Sciences
… Ultimately, this intuition can only be justified a posteriori by the generally good agreement
between our analytical results and computer simulations discussed below. A more thorough …

The effect of strong purifying selection on genetic diversity

I Cvijović, BH Good, MM Desai - Genetics, 2018 - academic.oup.com
Negative selection is a ubiquitous evolutionary force, but its effects on diversity in large
samples are poorly understood. Cvijović, Good, and Desai obtain simple analytical expressions …

Fate of a mutation in a fluctuating environment

I Cvijović, BH Good, ER Jerison… - Proceedings of the …, 2015 - National Acad Sciences
Natural environments are never truly constant, but the evolutionary implications of temporally
varying selection pressures remain poorly understood. Here we investigate how the fate of …

[HTML][HTML] Genetic diversity in the interference selection limit

BH Good, AM Walczak, RA Neher, MM Desai - PLoS genetics, 2014 - journals.plos.org
… In addition, the traditional measure of the deleterious load ceases to be a good predictor of
diversity in the interference selection regime, with more than an order of magnitude variation …

The impact of macroscopic epistasis on long-term evolutionary dynamics

BH Good, MM Desai - Genetics, 2015 - academic.oup.com
Genetic interactions can strongly influence the fitness effects of individual mutations, yet the
impact of these epistatic interactions on evolutionary dynamics remains poorly understood. …

Competition for fluctuating resources reproduces statistics of species abundance over time across wide-ranging microbiotas

PY Ho, BH Good, KC Huang - Elife, 2022 - elifesciences.org
Across diverse microbiotas, species abundances vary in time with distinctive statistical
behaviors that appear to generalize across hosts, but the origins and implications of these …

Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

M Roodgar, BH Good, NR Garud, S Martis… - Genome …, 2021 - genome.cshlp.org
Gut microbial communities can respond to antibiotic perturbations by rapidly altering their
taxonomic and functional composition. However, little is known about the strain-level …