User profiles for B. Ainscough
Benjamin J AinscoughWashington University in Saint Louis Verified email at go.wustl.edu Cited by 2726 |
Convergent loss of PTEN leads to clinical resistance to a PI (3) Kα inhibitor
…, HH Won, H Ellis, SH Ebbesen, BJ Ainscough… - Nature, 2015 - nature.com
Broad and deep tumour genome sequencing has shed new light on tumour heterogeneity
and provided important insights into the evolution of metastases arising from different clones 1 …
and provided important insights into the evolution of metastases arising from different clones 1 …
[HTML][HTML] CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
…, AC Coffman, AM Danos, BJ Ainscough… - Nature …, 2017 - nature.com
… B) Tracking of evidence statements within CIViC over time with respective contributions of
internal (Washington University, 'WashU') and external (community) curation. C) Treemap with …
internal (Washington University, 'WashU') and external (community) curation. C) Treemap with …
DGIdb 2.0: mining clinically relevant drug–gene interactions
AH Wagner, AC Coffman, BJ Ainscough… - Nucleic acids …, 2016 - academic.oup.com
… (B) The number of potentially druggable genes among the 488 genes recurrently mutated
in at least 2.5% of tumors, grouped by druggable gene categories. Colored bars indicate the …
in at least 2.5% of tumors, grouped by druggable gene categories. Colored bars indicate the …
[HTML][HTML] High-performance web services for querying gene and variant annotation
Efficient tools for data management and integration are essential for many aspects of high-throughput
biology. In particular, annotations of genes and human genetic variants are …
biology. In particular, annotations of genes and human genetic variants are …
[HTML][HTML] Informatics for RNA sequencing: a web resource for analysis on the cloud
Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for
interrogating RNA transcript abundance and diversity. This article provides a detailed …
interrogating RNA transcript abundance and diversity. This article provides a detailed …
[HTML][HTML] The prognostic effects of somatic mutations in ER-positive breast cancer
… GATA3 mutations were present in 28–30% of Luminal B cases and less so in luminal A …
Luminal B tumors in MA12 (8–13%) suggests that ATM disruption is also a possible luminal B …
Luminal B tumors in MA12 (8–13%) suggests that ATM disruption is also a possible luminal B …
[HTML][HTML] Genome-wide association study of CSF levels of 59 Alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid …
Cerebrospinal fluid (CSF) 42 amino acid species of amyloid beta (Aβ42) and tau levels are
strongly correlated with the presence of Alzheimer's disease (AD) neuropathology including …
strongly correlated with the presence of Alzheimer's disease (AD) neuropathology including …
DoCM: a database of curated mutations in cancer
… (b) Summary of the variants that passed manual review and were not identified in the
original TCGA analyses. (c) Summary of the variants that were validated in the 93 validation …
original TCGA analyses. (c) Summary of the variants that were validated in the 93 validation …
[HTML][HTML] Organizing knowledge to enable personalization of medicine in cancer
Abstract Interpretation of the clinical significance of genomic alterations remains the most
severe bottleneck preventing the realization of personalized medicine in cancer. We propose a …
severe bottleneck preventing the realization of personalized medicine in cancer. We propose a …
[HTML][HTML] Genome modeling system: a knowledge management platform for genomics
In this work, we present the Genome Modeling System (GMS), an analysis information
management system capable of executing automated genome analysis pipelines at a massive …
management system capable of executing automated genome analysis pipelines at a massive …