User profiles for B. Ainscough

Benjamin J Ainscough

Washington University in Saint Louis
Verified email at go.wustl.edu
Cited by 2726

Convergent loss of PTEN leads to clinical resistance to a PI (3) Kα inhibitor

…, HH Won, H Ellis, SH Ebbesen, BJ Ainscough… - Nature, 2015 - nature.com
Broad and deep tumour genome sequencing has shed new light on tumour heterogeneity
and provided important insights into the evolution of metastases arising from different clones 1 …

[HTML][HTML] CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

…, AC Coffman, AM Danos, BJ Ainscough… - Nature …, 2017 - nature.com
B) Tracking of evidence statements within CIViC over time with respective contributions of
internal (Washington University, 'WashU') and external (community) curation. C) Treemap with …

DGIdb 2.0: mining clinically relevant drug–gene interactions

AH Wagner, AC Coffman, BJ Ainscough… - Nucleic acids …, 2016 - academic.oup.com
… (B) The number of potentially druggable genes among the 488 genes recurrently mutated
in at least 2.5% of tumors, grouped by druggable gene categories. Colored bars indicate the …

[HTML][HTML] High-performance web services for querying gene and variant annotation

…, N Gopal, GS Stupp, TE Putman, BJ Ainscough… - Genome biology, 2016 - Springer
Efficient tools for data management and integration are essential for many aspects of high-throughput
biology. In particular, annotations of genes and human genetic variants are …

[HTML][HTML] Informatics for RNA sequencing: a web resource for analysis on the cloud

…, JR Walker, NC Spies, BJ Ainscough… - PLoS computational …, 2015 - journals.plos.org
Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for
interrogating RNA transcript abundance and diversity. This article provides a detailed …

[HTML][HTML] The prognostic effects of somatic mutations in ER-positive breast cancer

…, CA Miller, K Krysiak, J Hundal, BJ Ainscough… - Nature …, 2018 - nature.com
… GATA3 mutations were present in 28–30% of Luminal B cases and less so in luminal A …
Luminal B tumors in MA12 (8–13%) suggests that ATM disruption is also a possible luminal B

[HTML][HTML] Genome-wide association study of CSF levels of 59 Alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid …

…, CM Karch, O Harari, C Cruchaga, BJ Ainscough… - PLoS …, 2014 - journals.plos.org
Cerebrospinal fluid (CSF) 42 amino acid species of amyloid beta (Aβ42) and tau levels are
strongly correlated with the presence of Alzheimer's disease (AD) neuropathology including …

DoCM: a database of curated mutations in cancer

BJ Ainscough, M Griffith, AC Coffman, AH Wagner… - Nature …, 2016 - nature.com
… (b) Summary of the variants that passed manual review and were not identified in the
original TCGA analyses. (c) Summary of the variants that were validated in the 93 validation …

[HTML][HTML] Organizing knowledge to enable personalization of medicine in cancer

BM Good, BJ Ainscough, JF McMichael, AI Su… - Genome biology, 2014 - Springer
Abstract Interpretation of the clinical significance of genomic alterations remains the most
severe bottleneck preventing the realization of personalized medicine in cancer. We propose a …

[HTML][HTML] Genome modeling system: a knowledge management platform for genomics

…, J Hundal, ZL Skidmore, BJ Ainscough… - PLoS computational …, 2015 - journals.plos.org
In this work, we present the Genome Modeling System (GMS), an analysis information
management system capable of executing automated genome analysis pipelines at a massive …