User profiles for C. Sisu

Cristina Sisu

Brunel University London
Verified email at brunel.ac.uk
Cited by 29427

GENCODE reference annotation for the human and mouse genomes

…, I Jungreis, J Loveland, JM Mudge, C Sisu… - Nucleic acids …, 2019 - academic.oup.com
The accurate identification and description of the genes in the human and mouse genomes
is a fundamental requirement for high quality analysis of data informing both genome biology …

GENCODE 2021

…, JE Loveland, JM Mudge, C Sisu… - Nucleic acids …, 2021 - academic.oup.com
The GENCODE project annotates human and mouse genes and transcripts supported by
experimental data with high accuracy, providing a foundational resource that supports genome …

Integrative annotation of variants from 1092 humans: application to cancer genomics

…, D Muzny, TH Pers, GRS Ritchie, JA Rosenfeld, C Sisu… - Science, 2013 - science.org
… (C) Effects of SNVs at interaction interfaces on interactions of WASP with other proteins
tested by Y2H experiments. Wild-type (WT) WASP interacts with all proteins shown, whereas …

[HTML][HTML] Comparative analysis of the transcriptome across distant species

…, C Cheng, JB Brown, CA Davis, LD Hillier, C Sisu… - Nature, 2014 - nature.com
The transcriptome is the readout of the genome. Identifying common features in it across distant
species can reveal fundamental principles. To this end, the ENCODE and modENCODE …

[HTML][HTML] The GENCODE pseudogene resource

B Pei, C Sisu, A Frankish, C Howald, L Habegger… - Genome biology, 2012 - Springer
… (c) A duplicated pseudogene PDZ domain containing 1 pseudogene 1 (PDZK1P1; HAVANA
gene ID: OTTHUMG00000013746) and a spliced transcript model with nine exons. (d,e) …

[HTML][HTML] Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

…, C Sisu, M Sjoberg-Herrera, M Stanke, C Steward… - Nature …, 2018 - nature.com
We report full-length draft de novo genome assemblies for 16 widely used inbred mouse strains
and find extensive strain-specific haplotype variation. We identify and characterize 2,567 …

GENCODE: reference annotation for the human and mouse genomes in 2023

…, JM Mudge, C Sisu, JC Wright, C Arnan… - Nucleic acids …, 2023 - academic.oup.com
GENCODE produces high quality gene and transcript annotation for the human and mouse
genomes. All GENCODE annotation is supported by experimental data and serves as a …

[HTML][HTML] Is there a link between bisphenol A (BPA), a key endocrine disruptor, and the risk for SARS-CoV-2 infection and severe COVID-19?

A Zahra, C Sisu, E Silva, SC De Aguiar Greca… - Journal of Clinical …, 2020 - mdpi.com
Infection by the severe acute respiratory syndrome (SARS) coronavirus-2 (SARS-CoV-2) is
the causative agent of a new disease (COVID-19). The risk of severe COVID-19 is increased …

Pseudogenes as biomarkers and therapeutic targets in human cancers

C Sisu - Pseudogenes: Functions and Protocols, 2021 - Springer
Pseudogenes are commonly labeled as “junk DNA” given their perceived nonfunctional status.
However, the advent of large-scale genomics projects prompted a revisit of pseudogene …

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

…, M Muffato, S Nachtweide, MA Quail, C Sisu… - Genome …, 2018 - genome.cshlp.org
Understanding the mechanisms driving lineage-specific evolution in both primates and
rodents has been hindered by the lack of sister clades with a similar phylogenetic structure …