User profiles for C. Sisu
Cristina SisuBrunel University London Verified email at brunel.ac.uk Cited by 29427 |
GENCODE reference annotation for the human and mouse genomes
The accurate identification and description of the genes in the human and mouse genomes
is a fundamental requirement for high quality analysis of data informing both genome biology …
is a fundamental requirement for high quality analysis of data informing both genome biology …
GENCODE 2021
The GENCODE project annotates human and mouse genes and transcripts supported by
experimental data with high accuracy, providing a foundational resource that supports genome …
experimental data with high accuracy, providing a foundational resource that supports genome …
Integrative annotation of variants from 1092 humans: application to cancer genomics
… (C) Effects of SNVs at interaction interfaces on interactions of WASP with other proteins
tested by Y2H experiments. Wild-type (WT) WASP interacts with all proteins shown, whereas …
tested by Y2H experiments. Wild-type (WT) WASP interacts with all proteins shown, whereas …
[HTML][HTML] Comparative analysis of the transcriptome across distant species
The transcriptome is the readout of the genome. Identifying common features in it across distant
species can reveal fundamental principles. To this end, the ENCODE and modENCODE …
species can reveal fundamental principles. To this end, the ENCODE and modENCODE …
[HTML][HTML] The GENCODE pseudogene resource
… (c) A duplicated pseudogene PDZ domain containing 1 pseudogene 1 (PDZK1P1; HAVANA
gene ID: OTTHUMG00000013746) and a spliced transcript model with nine exons. (d,e) …
gene ID: OTTHUMG00000013746) and a spliced transcript model with nine exons. (d,e) …
[HTML][HTML] Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
We report full-length draft de novo genome assemblies for 16 widely used inbred mouse strains
and find extensive strain-specific haplotype variation. We identify and characterize 2,567 …
and find extensive strain-specific haplotype variation. We identify and characterize 2,567 …
GENCODE: reference annotation for the human and mouse genomes in 2023
GENCODE produces high quality gene and transcript annotation for the human and mouse
genomes. All GENCODE annotation is supported by experimental data and serves as a …
genomes. All GENCODE annotation is supported by experimental data and serves as a …
[HTML][HTML] Is there a link between bisphenol A (BPA), a key endocrine disruptor, and the risk for SARS-CoV-2 infection and severe COVID-19?
Infection by the severe acute respiratory syndrome (SARS) coronavirus-2 (SARS-CoV-2) is
the causative agent of a new disease (COVID-19). The risk of severe COVID-19 is increased …
the causative agent of a new disease (COVID-19). The risk of severe COVID-19 is increased …
Pseudogenes as biomarkers and therapeutic targets in human cancers
C Sisu - Pseudogenes: Functions and Protocols, 2021 - Springer
Pseudogenes are commonly labeled as “junk DNA” given their perceived nonfunctional status.
However, the advent of large-scale genomics projects prompted a revisit of pseudogene …
However, the advent of large-scale genomics projects prompted a revisit of pseudogene …
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
Understanding the mechanisms driving lineage-specific evolution in both primates and
rodents has been hindered by the lack of sister clades with a similar phylogenetic structure …
rodents has been hindered by the lack of sister clades with a similar phylogenetic structure …