User profiles for D. Osumi-Sutherland

David Osumi-Sutherland

European Bioinformatics Institute
Verified email at ebi.ac.uk
Cited by 9760

[HTML][HTML] Anatomical structures, cell types and biomarkers of the Human Reference Atlas

…, JC Gee, K Browne, D Osumi-Sutherland… - Nature cell …, 2021 - nature.com
The Human Reference Atlas (HRA) aims to map all of the cells of the human body to advance
biomedical research and clinical practice. This Perspective presents collaborative work by …

[HTML][HTML] Cell type ontologies of the Human Cell Atlas

D Osumi-Sutherland, C Xu, M Keays, AP Levine… - Nature cell …, 2021 - nature.com
Massive single-cell profiling efforts have accelerated our discovery of the cellular
composition of the human body while at the same time raising the need to formalize this new …

The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource

…, A McMahon, D Osumi-Sutherland… - Nucleic acids …, 2023 - academic.oup.com
… (B–D) Summary statistics sharing by publication year for (B) GWA studies (C) publications and
in the Catalog overall (D… (B–D) Summary statistics sharing by publication year for (B) GWA …

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

…, S Ngo, T Nielsen, CE O'Brien, D Osumi-Sutherland… - Science, 2022 - science.org
For more than 100 years, the fruit fly Drosophila melanogaster has been one of the most
studied model organisms. Here, we present a single-cell atlas of the adult fly, Tabula …

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

…, JA McMurry, D Osumi-Sutherland… - Nucleic acids …, 2019 - academic.oup.com
The Human Phenotype Ontology (HPO)—a standardized vocabulary of phenotypic
abnormalities associated with 7000+ diseases—is used by thousands of researchers, clinicians, …

FlyBase: enhancing Drosophila Gene Ontology annotations

…, G Millburn, D Osumi-Sutherland… - Nucleic acids …, 2009 - academic.oup.com
… Table 4 shows a summary of our current GO data for D. melanogaster. Although many of
the changes in GO annotation policy are quite recent, we can already see an improvement. …

[PDF][PDF] SynGO: an evidence-based, expert-curated knowledge base for the synapse

…, V Mariano, H Mi, M Ninov, D Osumi-Sutherland… - Neuron, 2019 - cell.com
Synapses are fundamental information-processing units of the brain, and synaptic dysregulation
is central to many brain disorders ("synaptopathies"). However, systematic annotation of …

Cell type discovery using single-cell transcriptomics: implications for ontological representation

…, JA Miller, AD Diehl, D Osumi-Sutherland… - Human molecular …, 2018 - academic.oup.com
Cells are fundamental function units of multicellular organisms, with different cell types
playing distinct physiological roles in the body. The recent advent of single-cell transcriptional …

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

…, SE Lewis, DA Natale, D Osumi-Sutherland… - Database, 2021 - academic.oup.com
Biological ontologies are used to organize, curate and interpret the vast quantities of data
arising from biological experiments. While this works well when using a single ontology, …

[HTML][HTML] Finding our way through phenotypes

…, CJ Mungall, A Oellrich, D Osumi-Sutherland… - PLoS …, 2015 - journals.plos.org
Despite a large and multifaceted effort to understand the vast landscape of phenotypic data,
their current form inhibits productive data analysis. The lack of a community-wide, consensus…