User profiles for D. Swarbreck

David Swarbreck

Group Leader, Earlham Institute
Verified email at earlham.ac.uk
Cited by 20586

Shifting the limits in wheat research and breeding using a fully annotated reference genome

…, V Prade, H Šimková, T Wicker, D Swarbreck… - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

A physical, genetic and functional sequence assembly of the barley genome.

…, D Marshall, M Bayer, D Swarbreck, D Sampath… - Nature, 2012 - iris.unito.it
Barley (Hordeum vulgare L.) is among the world's earliest domesticated and most important
crop plants. It is diploid with a large haploid genome of 5.1 gigabases (Gb). Here we present …

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

P Lamesch, TZ Berardini, D Li, D Swarbreck… - Nucleic acids …, 2012 - academic.oup.com
The Arabidopsis Information Resource (TAIR, http://arabidopsis.org ) is a genome database
for Arabidopsis thaliana, an important reference organism for many fundamental aspects of …

[HTML][HTML] Multiple wheat genomes reveal global variation in modern breeding

…, P Juliana, R Singh, R Shimizu-Inatsugi, D Swarbreck… - Nature, 2020 - nature.com
… A, B and D in these designations correspond to separate subgenomes derived from three
ancestral diploid species with similar but distinct genome structure and gene content that …

Efficient and accurate detection of splice junctions from RNA-seq with Portcullis

…, L Venturini, G Kaithakottil, D Swarbreck - GigaScience, 2018 - academic.oup.com
Next-generation sequencing technologies enable rapid and cheap genome-wide transcriptome
analysis, providing vital information about gene structure, transcript expression, and …

The Arabidopsis Information Resource (TAIR): gene structure and function annotation

D Swarbreck, C Wilks, P Lamesch… - Nucleic acids …, 2007 - academic.oup.com
The Arabidopsis Information Resource (TAIR, http://arabidopsis.org ) is the model organism
database for the fully sequenced and intensively studied model plant Arabidopsis thaliana . …

The DNA sequence and biological annotation of human chromosome 1

…, KF Barlow, KE McLay, R Kaul, D Swarbreck… - Nature, 2006 - nature.com
The reference sequence for each human chromosome provides the framework for understanding
genome function, variation and evolution. Here we report the finished sequence and …

[HTML][HTML] GENCODE: producing a reference annotation for ENCODE

…, J Lagarde, JGR Gilbert, R Storey, D Swarbreck… - Genome biology, 2006 - Springer
… Panel D shows the GENCODE unprocessed pseudogene locus AC087380.14 at which
Ensembl predicts a coding gene. The arrow indicates a tiny intron introduced into the prediction …

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

…, D Heavens, M Alston, D Swarbreck… - The ISME …, 2013 - academic.oup.com
Plant–microbe interactions in the rhizosphere have important roles in biogeochemical cycling,
and maintenance of plant health and productivity, yet remain poorly understood. Using …

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …

…, C Uauy, KV Krasileva, D Swarbreck… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-quality
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …