User profiles for D. Vallenet

David Vallenet

CEA - Genoscope - UMR8030 - LABGeM
Verified email at genoscope.cns.fr
Cited by 13662

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

…, P Wincker, V Barbe, N Fonknechten, D Vallenet… - Nature, 2006 - nature.com
… The asterisk indicates a novel cofactor binding site with weak homology to cytochrome d
and quinoheme binding sites. b, ORFs kuste2469–kuste2483 encode a new multicopper …

[HTML][HTML] Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

…, D Schneider, J Tourret, B Vacherie, D Vallenet… - PLoS …, 2009 - journals.plos.org
… estimated by Tajima's D statistics. We found that overall a gene's average Tajima's D was
slightly negative (indicating an excess of rare alleles). However, the Tajima's D of synonymous …

[HTML][HTML] Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii

PE Fournier, D Vallenet, V Barbe, S Audic… - PLoS …, 2006 - journals.plos.org
Acinetobacter baumannii is a species of nonfermentative gram-negative bacteria commonly
found in water and soil. This organism was susceptible to most antibiotics in the 1970s. It …

Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia

E Giraud, L Moulin, D Vallenet, V Barbe, E Cytryn… - Science, 2007 - science.org
Leguminous plants (such as peas and soybeans) and rhizobial soil bacteria are symbiotic
partners that communicate through molecular signaling pathways, resulting in the formation of …

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

…, Z Rouy, A Sekowska, ML Tutino, D Vallenet… - Genome …, 2005 - genome.cshlp.org
A considerable fraction of life develops in the sea at temperatures lower than 15C. Little is
known about the adaptive features selected under those conditions. We present the analysis …

Genome sequences of Escherichia coli B strains REL606 and BL21 (DE3)

H Jeong, V Barbe, CH Lee, D Vallenet, DS Yu… - Journal of molecular …, 2009 - Elsevier
Escherichia coli K-12 and B have been the subjects of classical experiments from which
much of our understanding of molecular genetics has emerged. We present here complete …

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

D Vallenet, E Belda, A Calteau, S Cruveiller… - Nucleic acids …, 2013 - academic.oup.com
MicroScope is an integrated platform dedicated to both the methodical updating of microbial
genome annotation and to comparative analysis. The resource provides data from …

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

…, A Sellstedt, F Tavares, JP Tomkins, D Vallenet… - Genome …, 2007 - genome.cshlp.org
Soil bacteria that also form mutualistic symbioses in plants encounter two major levels of
selection. One occurs during adaptation to and survival in soil, and the other occurs in concert …

[HTML][HTML] Comparative analysis of Acinetobacters: three genomes for three lifestyles

D Vallenet, P Nordmann, V Barbe, L Poirel… - PloS one, 2008 - journals.plos.org
… frameshift would allow the regulation of the production of fully functional phospholipase D. …
713 (C) and 2691 (D) reads for AYE and 514 (C) and 18156 (D) reads for SDF. Repeated …

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

…, G Meurice, A Sekowska, D Vallenet… - …, 2009 - microbiologyresearch.org
Comparative genomics is the cornerstone of identification of gene functions. The immense
number of living organisms precludes experimental identification of functions except in a …