From molecules to ecosystems through dynamic energy budget models
1. Dynamic energy budget (DEB) models describe how individuals acquire and utilize energy,
and can serve as a link between different levels of biological organization. 2. We describe …
and can serve as a link between different levels of biological organization. 2. We describe …
Aerobic domestic waste water treatment in a pilot plant with complete sludge retention by cross-flow filtration
EB Muller, AH Stouthamer, HW van Verseveld… - Water Research, 1995 - Elsevier
An aerobic wastewater treatment pilot plant with cross-flow filtration was operated for more
than 300 days to examine whether reduced sludge production and stable treatment …
than 300 days to examine whether reduced sludge production and stable treatment …
Impacts of metal oxide nanoparticles on marine phytoplankton
Information on the toxicity of environmentally relevant concentrations of nanoparticles in
marine ecosystems is needed for informed regulation of these emerging materials. We tested …
marine ecosystems is needed for informed regulation of these emerging materials. We tested …
[HTML][HTML] The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex
We have established a multi-constraint, data-driven process to digitally reconstruct, and
simulate prototypical neocortical microcircuitry, using sparse experimental data. We applied this …
simulate prototypical neocortical microcircuitry, using sparse experimental data. We applied this …
[HTML][HTML] BluePyOpt: leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience
…, C Rössert, JD Courcol, EB Muller… - Frontiers in …, 2016 - frontiersin.org
At many scales in neuroscience, appropriate mathematical models take the form of complex
dynamical systems. Parameterizing such models to conform to the multitude of available …
dynamical systems. Parameterizing such models to conform to the multitude of available …
[HTML][HTML] An algorithm to predict the connectome of neural microcircuits
MW Reimann, JG King, EB Muller… - Frontiers in …, 2015 - frontiersin.org
Experimentally mapping synaptic connections, in terms of the numbers and locations of their
synapses and estimating connection probabilities, is still not a tractable task, even for small …
synapses and estimating connection probabilities, is still not a tractable task, even for small …
[HTML][HTML] The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow
Every neuron is part of a network, exerting its function by transforming multiple spatiotemporal
synaptic input patterns into a single spiking output. This function is specified by the …
synaptic input patterns into a single spiking output. This function is specified by the …
[HTML][HTML] A dynamic bioenergetic model for coral-Symbiodinium symbioses and coral bleaching as an alternate stable state
Coral reef ecosystems owe their ecological success – and vulnerability to climate change –
to the symbiotic metabolism of corals and Symbiodinium spp. The urgency to understand …
to the symbiotic metabolism of corals and Symbiodinium spp. The urgency to understand …
Bullfrogs, disturbance regimes, and the persistence of California red-legged frogs
The introduction and spread of bullfrogs (Rana catesbeiana) in western North America may
have played a central role in the declines of native ranid frogs. Specifically, a positive …
have played a central role in the declines of native ranid frogs. Specifically, a positive …
Quantitative adverse outcome pathway analysis of hatching in zebrafish with CuO nanoparticles
This study develops and evaluates a mechanistic model of the hatching of zebrafish eggs
that were exposed to CuO engineered nanoparticles (ENP) in a high-throughput screening …
that were exposed to CuO engineered nanoparticles (ENP) in a high-throughput screening …