Annotation of functional variation in personal genomes using RegulomeDB

AP Boyle, EL Hong, M Hariharan, Y Cheng… - Genome …, 2012 - genome.cshlp.org
As the sequencing of healthy and disease genomes becomes more commonplace, detailed
annotation provides interpretation for individual variation responsible for normal and …

Saccharomyces Genome Database: the genomics resource of budding yeast

JM Cherry, EL Hong, C Amundsen… - Nucleic acids …, 2012 - academic.oup.com
… and Hong, EL CvManGO, a method for leveraging computational predictions to improve
literature-based GO annotations. submitted to Database for Biocuration 2012 virtual issue.). The …

ENCODE data at the ENCODE portal

…, G Roe, NR Podduturi, F Tanaka, EL Hong… - Nucleic acids …, 2016 - academic.oup.com
The Encyclopedia of DNA Elements (ENCODE) Project is in its third phase of creating a
comprehensive catalog of functional elements in the human genome. This phase of the project …

YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

…, J Park, K Karra, BC Hitz, G Binkley, EL Hong… - Database, 2012 - academic.oup.com
The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/ ) provides high-quality
curated genomic, genetic, and molecular information on the genes and their …

Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome

…, SS Dwight, SR Engel, DG Fisk, EL Hong… - Nucleic acids …, 2006 - academic.oup.com
Sequencing and annotation of the entire Saccharomyces cerevisiae genome has made it
possible to gain a genome-wide perspective on yeast genes and gene products. To make this …

Gene Ontology annotations at SGD: new data sources and annotation methods

EL Hong, R Balakrishnan, Q Dong… - Nucleic acids …, 2007 - academic.oup.com
The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/ ) collects and
organizes biological information about the chromosomal features and gene products of the …

Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other …

…, DG Fisk, JE Hirschman, EL Hong… - Nucleic acids …, 2004 - academic.oup.com
The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/ ), a scientific
database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae , has …

[HTML][HTML] Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects

…, H Guturu, AR Girshick, CA Ball, EL Hong… - Nature …, 2022 - nature.com
Multiple COVID-19 genome-wide association studies (GWASs) have identified reproducible
genetic associations indicating that there is a genetic component to susceptibility and …

[PDF][PDF] Resources for the comprehensive discovery of functional RNA elements

…, GA Pratt, SC Huelga, BM Smalec, X Wang, EL Hong… - Molecular cell, 2016 - cell.com
Transcriptome-wide maps of RNA binding protein (RBP)-RNA interactions by immunoprecipitation
(IP)-based methods such as RNA IP (RIP) and crosslinking and IP (CLIP) are key …

[HTML][HTML] Clustering of 770,000 genomes reveals post-colonial population structure of North America

…, E Battat, E Elyashiv, H Guturu, EL Hong… - Nature …, 2017 - nature.com
Despite strides in characterizing human history from genetic polymorphism data, progress in
identifying genetic signatures of recent demography has been limited. Here we identify very …