Evolution and classification of the CRISPR–Cas systems
…, R Barrangou, SJJ Brouns, E Charpentier… - Nature Reviews …, 2011 - nature.com
… For example, the unique genes found in the E. coli system were denoted cse1 (CRISPR
system of E. coli gene number 1), cse2, cse3, cse4 and cas5e (elsewhere, these …
system of E. coli gene number 1), cse2, cse3, cse4 and cas5e (elsewhere, these …
A programmable dual-RNA–guided DNA endonuclease in adaptive bacterial immunity
… (E) Plasmids containing WT and mutant protospacer 2 inserts with varying extent of crRNA-target
DNA mismatches (right) were cleaved in vitro by programmed Cas9 (left). The cleavage …
DNA mismatches (right) were cleaved in vitro by programmed Cas9 (left). The cleavage …
The new frontier of genome engineering with CRISPR-Cas9
JA Doudna, E Charpentier - Science, 2014 - science.org
… In 2008, mature CRISPR RNAs (crRNAs) were shown to serve as guides in a complex
with Cas proteins to interfere with virus proliferation in E. coli (47). The same year, the DNA …
with Cas proteins to interfere with virus proliferation in E. coli (47). The same year, the DNA …
An updated evolutionary classification of CRISPR–Cas systems
…, R Barrangou, SJJ Brouns, E Charpentier… - Nature reviews …, 2015 - nature.com
The evolution of CRISPR–cas loci, which encode adaptive immune systems in archaea and
bacteria, involves rapid changes, in particular numerous rearrangements of the locus …
bacteria, involves rapid changes, in particular numerous rearrangements of the locus …
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
…, OS Alkhnbashi, SJJ Brouns, E Charpentier… - Nature Reviews …, 2020 - nature.com
… The subtype III-E loci often include a putative ancillary gene encoding a large protein that …
or neofunctionalization of subtype III-E systems and their potential involvement in complex …
or neofunctionalization of subtype III-E systems and their potential involvement in complex …
[PDF][PDF] The biology of CRISPR-Cas: backward and forward
…, SP Wong, M Bratovič, S Ressel, E Charpentier - Cell, 2018 - cell.com
… In the first pathway, exemplified by the type IE system of E. coli, crRNA bound by Cas6
serves as a scaffold for Cascade assembly. Cascade first recognizes the PAM (yellow) on the …
serves as a scaffold for Cascade assembly. Cascade first recognizes the PAM (yellow) on the …
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
…, ZA Pirzada, MR Eckert, J Vogel, E Charpentier - Nature, 2011 - nature.com
… were synthesized, annealed in vitro and incubated with E. coli RNase III. Whereas neither of
… Transformation of E. coli with plasmid DNA was carried out according to standard protocols …
… Transformation of E. coli with plasmid DNA was carried out according to standard protocols …
Structures of Cas9 endonucleases reveal RNA-mediated conformational activation
… (D) Surface electrostatic potential map of SpyCas9 colored from −10 kT/e (red) to +10 kT/e
(blue) (61). (E) Surface representation of SpyCas9 colored according to evolutionary …
(blue) (61). (E) Surface representation of SpyCas9 colored according to evolutionary …
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
…, H Richter, M Bratovič, A Le Rhun, E Charpentier - Nature, 2016 - nature.com
… e, Plasmids containing protospacer 5 and single or quadruple mismatches (mut_1-4 and
mut_19-22) … Data in a, b, d and e are representatives of at least three independent experiments. …
mut_19-22) … Data in a, b, d and e are representatives of at least three independent experiments. …
Classification and evolution of type II CRISPR-Cas systems
K Chylinski, KS Makarova, E Charpentier… - Nucleic acids …, 2014 - academic.oup.com
… The Cas4 proteins belong to the PD-(D/E)xK family of nucleases (8) and indeed have been
shown to possess 5′-single-stranded DNA exonuclease activity (20). Similar to Csn2, the …
shown to possess 5′-single-stranded DNA exonuclease activity (20). Similar to Csn2, the …