User profiles for F. Brinkman
Fiona BrinkmanSimon Fraser University Verified email at sfu.ca Cited by 34677 |
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
…, S Bidwell, A Bridge, L Briganti, FSL Brinkman… - Nature …, 2012 - nature.com
… In the version of this article initially published, the names of two authors, Fiona SL Brinkman
and Robert EW Hancock, were incorrectly listed without middle initials. The error has been …
and Robert EW Hancock, were incorrectly listed without middle initials. The error has been …
Function of Pseudomonas Porins in Uptake and Efflux
REW Hancock, FSL Brinkman - Annual Reviews in Microbiology, 2002 - annualreviews.org
▪ Abstract Porins are proteins that form water-filled channels across the outer membranes of
Gram-negative bacteria and thus make this membrane semipermeable. There are four types …
Gram-negative bacteria and thus make this membrane semipermeable. There are four types …
Detecting genomic islands using bioinformatics approaches
… Langille, MGI, Hsiao, WWL & Brinkman, FSL Evaluation of genomic island predictors using
a comparative genomics approach. BMC Bioinformatics 9, 329 (2008). An in-depth analysis …
a comparative genomics approach. BMC Bioinformatics 9, 329 (2008). An in-depth analysis …
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
…, SD Mizoguchi, P Warrener, MJ Hickey, FSL Brinkman… - Nature, 2000 - nature.com
… Mizoguchi managed the genome informatics databases, web site and analysis tools
development; Kim Smith managed much of the primary-shotgun data collection; and F. Brinkman …
development; Kim Smith managed much of the primary-shotgun data collection; and F. Brinkman …
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
The Comprehensive Antibiotic Resistance Database (CARD; https://card.mcmaster.ca ) is a
curated resource providing reference DNA and protein sequences, detection models and …
curated resource providing reference DNA and protein sequences, detection models and …
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
Motivation: PSORTb has remained the most precise bacterial protein subcellular localization
(SCL) predictor since it was first made available in 2003. However, the recall needs to be …
(SCL) predictor since it was first made available in 2003. However, the recall needs to be …
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
The Comprehensive Antibiotic Resistance Database (CARD; http://arpcard.mcmaster.ca ) is
a manually curated resource containing high quality reference data on the molecular basis …
a manually curated resource containing high quality reference data on the molecular basis …
The genome sequence of taurine cattle: a window to ruminant biology and evolution
To understand the biology and evolution of ruminants, the cattle genome was sequenced to
about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a …
about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a …
InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
InnateDB ( http://www.innatedb.com ) is an integrated analysis platform that has been specifically
designed to facilitate systems-level analyses of mammalian innate immunity networks, …
designed to facilitate systems-level analyses of mammalian innate immunity networks, …
PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
Motivation: PSORTb v.1.1 is the most precise bacterial localization prediction tool available.
However, the program's predictive coverage and recall are low and the method is only …
However, the program's predictive coverage and recall are low and the method is only …