The publication of a complete genome sequence is usually accompanied by annotations of
its genes. In contrast to protein coding genes, genes for ribosomal RNA (rRNA) are often …

Genome-scale human protein–protein interaction networks are critical to understanding cell
biology and interpreting genomic data, but challenging to produce experimentally. Through …

We have developed an entirely sequence-based method that identifies and integrates relevant
features that can be used to assign proteins of unknown function to functional classes, …

Background Comparative whole genome analysis of Mammalia can benefit from the addition
of more species. The pig is an obvious choice due to its economic and medical importance …

Motivation: The human genome project has led to the discovery of many human protein
coding genes which were previously unknown. As a large fraction of these are functionally …

Across academia and industry, text mining has become a popular strategy for keeping up with
the rapid growth of the scientific literature. Text mining of the scientific literature has mostly …

We have performed a computational analysis of DNA structural features in 18 fully sequenced
prokaryotic genomes using models for DNA curvature, DNA flexibility, and DNA stability. …

To predict origins of replication in prokaryotic chromosomes, we analyse the leading and
lagging strands of 200 chromosomes for differences in oligomer composition and show that …

We have characterized the development of seeds in the model legume Lotus japonicus. Like
soybean (Glycine max) and pea (Pisum sativum), Lotus develops straight seed pods and …

Background Knowledge of the structure of gene expression is essential for mammalian
transcriptomics research. We analyzed a collection of more than one million porcine expressed …