User profiles for J. A. Eddy

James A Eddy

Director of Informatics & Biocomputing, Sage Bionetworks
Verified email at sagebase.org
Cited by 7729

[PDF][PDF] The immune landscape of cancer

…, E Porta-Pardo, GF Gao, CL Plaisier, JA Eddy… - Immunity, 2018 - cell.com
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising
33 diverse cancer types by utilizing data compiled by TCGA. Across cancer types, we …

The Maunder Minimum: The reign of Louis XIV appears to have been a time of real anomaly in the behavior of the sun.

JA Eddy - Science, 1976 - science.org
JohnA. Eddy zero. In contrast, in the years around a sunspot maximum there is seldom a
day wh~ na number of spots cannot be seen, and often hundreds are present. Past counts of …

Climate and the changing sun

JA Eddy - Climatic change, 1977 - Springer
Long-term changes in the level of solar activity are found in historical records and in fossil
radiocarbon in tree-rings. Typical of these changes are the Maunder Minimum (AD 1645–1715…

[HTML][HTML] The immune landscape of cancer

…, E Porta-Pardo, GF Gao, CL Plaisier, JA Eddy… - Immunity, 2019 - cell.com
In the originally published version of this article, the authors neglected to include Younes
Mokrab and Aaron M. Newman as co-authors and misspelled the names of authors Charles S. …

[PDF][PDF] IL-10 alters immunoproteostasis in APP mice, increasing plaque burden and worsening cognitive behavior

P Chakrabarty, A Li, C Ceballos-Diaz, JA Eddy… - Neuron, 2015 - cell.com
Anti-inflammatory strategies are proposed to have beneficial effects in Alzheimer's disease.
To explore how anti-inflammatory cytokine signaling affects Aβ pathology, we investigated …

[HTML][HTML] Dynamic analysis of integrated signaling, metabolic, and regulatory networks

…, EP Gianchandani, JA Eddy, JA Papin - PLoS computational …, 2008 - journals.plos.org
Extracellular cues affect signaling, metabolic, and regulatory processes to elicit cellular
responses. Although intracellular signaling, metabolic, and regulatory networks are highly …

[HTML][HTML] Human whole genome genotype and transcriptome data for Alzheimer's and other neurodegenerative diseases

…, CS Younkin, JD Burgess, HS Chai, J Crook, JA Eddy… - Scientific data, 2016 - nature.com
Previous genome-wide association studies (GWAS), conducted by our group and others,
have identified loci that harbor risk variants for neurodegenerative diseases, including …

[PDF][PDF] GA4GH: International policies and standards for data sharing across genomic research and healthcare

…, LI Dolman, ES Dove, LJ Dursi, SOM Dyke, JA Eddy… - Cell genomics, 2021 - cell.com
The Global Alliance for Genomics and Health (GA4GH) aims to accelerate biomedical
advances by enabling the responsible sharing of clinical and genomic data through both …

[PDF][PDF] Meta-analysis of the Alzheimer's disease human brain transcriptome and functional dissection in mouse models

…, SK Sieberts, L Omberg, KD Dang, JA Eddy… - Cell reports, 2020 - cell.com
We present a consensus atlas of the human brain transcriptome in Alzheimer's disease (AD),
based on meta-analysis of differential gene expression in 2,114 postmortem samples. We …

[HTML][HTML] Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

Y Wang, JA Eddy, ND Price - BMC systems biology, 2012 - Springer
Background Human tissues perform diverse metabolic functions. Mapping out these tissue-specific
functions in genome-scale models will advance our understanding of the metabolic …