User profiles for J. E. Shoemaker

Jason E Shoemaker

University of Pittsburgh
Verified email at pitt.edu
Cited by 1719

Cationic lipids enhance cellular uptake and activity of phosphorothioate antisense oligonucleotides.

CF Bennett, MY Chiang, H Chan, JE Shoemaker… - Molecular …, 1992 - ASPET
We have investigated the use of a cationic lipid preparation to enhance antisense oligonucleotide
activity in human umbilical vein endothelial cells. A liposomal preparation containing …

[PDF][PDF] Influenza virus-host interactome screen as a platform for antiviral drug development

T Watanabe, E Kawakami, JE Shoemaker, TJS Lopes… - Cell host & …, 2014 - cell.com
Host factors required for viral replication are ideal drug targets because they are less likely
than viral proteins to mutate under drug-mediated selective pressure. Although genome-wide …

[HTML][HTML] A comprehensive map of the influenza A virus replication cycle

…, G Neumann, T Hase, S Ghosh, JE Shoemaker… - BMC systems …, 2013 - Springer
Background Influenza is a common infectious disease caused by influenza viruses. Annual
epidemics cause severe illnesses, deaths, and economic loss around the world. To better …

[HTML][HTML] CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data

JE Shoemaker, TJS Lopes, S Ghosh, Y Matsuoka… - BMC genomics, 2012 - Springer
Background Interpreting in vivo sampled microarray data is often complicated by changes in
the cell population demographics. To put gene expression into its proper biological context, …

[HTML][HTML] Multi-spectral fluorescent reporter influenza viruses (Color-flu) as powerful tools for in vivo studies

…, D Zhao, M Ozawa, T Ando, JE Shoemaker… - Nature …, 2015 - nature.com
Seasonal influenza A viruses cause annual epidemics of respiratory disease; highly pathogenic
avian H5N1 and the recently emerged H7N9 viruses cause severe infections in humans…

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

…, M Wang, EE Ackerman, JE Shoemaker… - Molecular systems …, 2021 - embopress.org
We need to effectively combine the knowledge from surging literature with complex datasets
to propose mechanistic models of SARS‐CoV‐2 infection, improving data interpretation and …

[HTML][HTML] Adding protein context to the human protein-protein interaction network to reveal meaningful interactions

…, TJS Lopes, N Mah, JE Shoemaker… - PLoS computational …, 2013 - journals.plos.org
Interactions of proteins regulate signaling, catalysis, gene expression and many other cellular
functions. Therefore, characterizing the entire human interactome is a key effort in current …

Iterative community-driven development of a SARS-CoV-2 tissue simulator

…, E Pienaar, P Rangamani, AS Saglam, JE Shoemaker… - BioRxiv, 2020 - biorxiv.org
The 2019 novel coronavirus, SARS-CoV-2, is an emerging pathogen of critical significance
to international public health. Knowledge of the interplay between molecular-scale virus-…

Disease severity is associated with differential gene expression at the early and late phases of infection in nonhuman primates infected with different H5N1 highly …

Y Muramoto, JE Shoemaker, MQ Le, Y Itoh… - Journal of …, 2014 - Am Soc Microbiol
Occasional transmission of highly pathogenic avian H5N1 influenza viruses to humans
causes severe pneumonia with high mortality. To better understand the mechanisms via which …

Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection

H Noh, JE Shoemaker, R Gunawan - Nucleic acids research, 2018 - academic.oup.com
Genome-wide transcriptional profiling provides a global view of cellular state and how this
state changes under different treatments (eg drugs) or conditions (eg healthy and diseased). …