User profiles for J. Fouquier

Jennifer Fouquier

University of Colorado, Anschutz Medical Campus
Verified email at cuanschutz.edu
Cited by 13704

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

…, CF Edwardson, M Ernst, M Estaki, J Fouquier… - Nature …, 2019 - nature.com
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …

[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

…, CF Edwardson, M Ernst, M Estaki, J Fouquier… - 2018 - peerj.com
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …

Geography and location are the primary drivers of office microbiome composition

J Chase, J Fouquier, M Zare, DL Sonderegger… - …, 2016 - Am Soc Microbiol
In the United States, humans spend the majority of their time indoors, where they are
exposed to the microbiome of the built environment (BE) they inhabit. Despite the ubiquity of …

Ecological succession and viability of human-associated microbiota on restroom surfaces

SM Gibbons, T Schwartz, J Fouquier… - Applied and …, 2015 - Am Soc Microbiol
Human-associated bacteria dominate the built environment (BE). Following decontamination
of floors, toilet seats, and soap dispensers in four public restrooms, in situ bacterial …

[HTML][HTML] Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

J Fouquier, JR Rideout, E Bolyen, J Chase, A Shiffer… - Microbiome, 2016 - Springer
Background Fungi play critical roles in many ecosystems, cause serious diseases in plants
and animals, and pose significant threats to human health and structural integrity problems in …

The gut microbiome in autism: study-site effects and longitudinal analysis of behavior change

J Fouquier, N Moreno Huizar, J Donnelly, C Glickman… - …, 2021 - Am Soc Microbiol
… Jennifer Fouquier is funded by NIH US National Library of Medicine, Colorado Biomedical
… Jennifer Fouquier and Nancy Moreno Huizar had equal contribution to this paper and order …

Rapid assemblage of diverse environmental fungal communities on public restroom floors

J Fouquier, T Schwartz, ST Kelley - Indoor air, 2016 - Wiley Online Library
… The Scripps Research Institute for their help with sequencing, John Thompson for his help
with speeding up the clustering method comparisons, and the members of Jennifer Fouquier's

[HTML][HTML] Citizen science for mining the biomedical literature

G Tsueng, SM Nanis, J Fouquier… - Citizen science: theory …, 2016 - ncbi.nlm.nih.gov
… p e r s w i t h c i t s c i c o a u t h o r s ( p r o j e c t a g e ) 2 0 ( 295 ) 2 0 Communication P r o
j e c t c o m m u n i c a t i o n a c t i v i t y ( p r o j e c t a c t i v e p e r i o d ) 2 221 ( 28 ) 2 0.282 …

Intestinal microbial communities and Holdemanella isolated from HIV+/− men who have sex with men increase frequencies of lamina propria CCR5+ CD4+ T cells

E Yamada, CG Martin, N Moreno-Huizar, J Fouquier… - Gut …, 2021 - Taylor & Francis
Men who have sex with men (MSM), regardless of HIV infection status, have an intestinal
microbiome that is compositionally distinct from men who have sex with women (MSW) and …

Systems analysis of gut microbiome influence on metabolic disease in HIV-positive and high-risk populations

AJS Armstrong, K Quinn, J Fouquier, SX Li… - …, 2021 - Am Soc Microbiol
Poor metabolic health, characterized by insulin resistance and dyslipidemia, is higher in
people living with HIV and has been linked with inflammation, antiretroviral therapy (ART) drugs…