Next-generation characterization of the cancer cell line encyclopedia

…, M Liu, J Lehar, JM Korn, DA Porter, MD Jones, J Golji… - Nature, 2019 - nature.com
Large panels of comprehensively characterized human cancer models, including the Cancer
Cell Line Encyclopedia (CCLE), have provided a rigorous framework with which to study …

[PDF][PDF] Project DRIVE: a compendium of cancer dependencies and synthetic lethal relationships uncovered by large-scale, deep RNAi screening

…, D Belur, D Castelletti, E Frias, K Gampa, J Golji… - Cell, 2017 - cell.com
Elucidation of the mutational landscape of human cancer has progressed rapidly and been
accompanied by the development of therapeutics targeting mutant oncogenes. However, a …

[HTML][HTML] Quantitative proteomics of the cancer cell line encyclopedia

…, E Gelfand, DK Schweppe, M Jedrychowski, J Golji… - Cell, 2020 - Elsevier
Proteins are essential agents of biological processes. To date, large-scale profiling of cell line
collections including the Cancer Cell Line Encyclopedia (CCLE) has focused primarily on …

CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions

…, PJ Cassiani, L Li, E Billy, JM Korn, MD Jones, J Golji… - Cancer discovery, 2016 - AACR
CRISPR/Cas9 has emerged as a powerful new tool to systematically probe gene function.
We compared the performance of CRISPR to RNAi-based loss-of-function screens for the …

Tumor-derived IFN triggers chronic pathway agonism and sensitivity to ADAR loss

H Liu, J Golji, LK Brodeur, FS Chung, JT Chen… - Nature medicine, 2019 - nature.com
Interferons (IFNs) are cytokines that play a critical role in limiting infectious and malignant
diseases 1 , 2 , 3 – 4 . Emerging data suggest that the strength and duration of IFN signaling …

[HTML][HTML] Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease

A Dumitriu, J Golji, AT Labadorf, B Gao, TG Beach… - BMC medical …, 2015 - Springer
Background Parkinson disease (PD) is a neurodegenerative disease characterized by the
accumulation of alpha-synuclein (SNCA) and other proteins in aggregates termed “Lewy …

[PDF][PDF] Integrated CRISPR screening and drug profiling identifies combination opportunities for EGFR, ALK, and BRAF/MEK inhibitors

…, E Labrot, BS Engstler, S Baltschukat, G Kerr, J Golji… - Cell Reports, 2023 - cell.com
Anti-tumor efficacy of targeted therapies is variable across patients and cancer types. Even
in patients with initial deep response, tumors are typically not eradicated and eventually …

[HTML][HTML] Cancer lineage-specific regulation of YAP responsive elements revealed through large-scale functional epigenomic screens

…, A Lindeman, C Russ, U Naumann, J Golji… - Nature …, 2023 - nature.com
YAP is a key transcriptional co-activator of TEADs, it regulates cell growth and is frequently
activated in cancer. In Malignant Pleural Mesothelioma (MPM), YAP is activated by loss-of-…

[HTML][HTML] The interaction of vinculin with actin

J Golji, MRK Mofrad - PLoS computational biology, 2013 - journals.plos.org
Vinculin can interact with F-actin both in recruitment of actin filaments to the growing focal
adhesions and also in capping of actin filaments to regulate actin dynamics. Using molecular …

[PDF][PDF] TRPS1 is a lineage-specific transcriptional dependency in breast cancer

…, K Yu, Y Xie, G McAllister, R McDonald, J Golji… - Cell reports, 2018 - cell.com
Perturbed epigenomic programs play key roles in tumorigenesis, and chromatin modulators
are candidate therapeutic targets in various human cancer types. To define singular and …