User profiles for J. Kodysh
Julia KodyshOpenVax @ Icahn School of Medicine at Mount Sinai Verified email at openvax.org Cited by 2350 |
[PDF][PDF] Immunology of COVID-19: current state of the science
The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) has affected millions of people worldwide, igniting an …
syndrome coronavirus 2 (SARS-CoV-2) has affected millions of people worldwide, igniting an …
[PDF][PDF] Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
…, J Greshock, J Blake, J Szustakowski, J Kodysh… - Cell, 2020 - cell.com
Many approaches to identify therapeutically relevant neoantigens couple tumor sequencing
with bioinformatic algorithms and inferred rules of tumor epitope immunogenicity. However, …
with bioinformatic algorithms and inferred rules of tumor epitope immunogenicity. However, …
Methodology for estimating solar potential on multiple building rooftops for photovoltaic systems
JB Kodysh, OA Omitaomu, BL Bhaduri… - Sustainable Cities and …, 2013 - Elsevier
In this paper, a methodology for estimating solar potential on multiple building rooftops is
presented. The objective of this methodology is to estimate the daily or monthly solar energy on …
presented. The objective of this methodology is to estimate the daily or monthly solar energy on …
Bioinformatic methods for cancer neoantigen prediction
Tumor cells accumulate aberrations not present in normal cells, leading to presentation of
neoantigens on MHC molecules on their surface. These non-self neoantigens distinguish …
neoantigens on MHC molecules on their surface. These non-self neoantigens distinguish …
[PDF][PDF] Google correlate whitepaper
Background Web search activity has previously been shown useful for providing estimates
of real-world activity in a variety of contexts, with the most common being health and …
of real-world activity in a variety of contexts, with the most common being health and …
[HTML][HTML] Landscape and selection of vaccine epitopes in SARS-CoV-2
Background Early in the pandemic, we designed a SARS-CoV-2 peptide vaccine containing
epitope regions optimized for concurrent B cell, CD4 + T cell, and CD8 + T cell stimulation. …
epitope regions optimized for concurrent B cell, CD4 + T cell, and CD8 + T cell stimulation. …
[HTML][HTML] Computational pipeline for the PGV-001 neoantigen vaccine trial
A Rubinsteyn, J Kodysh, I Hodes, S Mondet… - Frontiers in …, 2018 - frontiersin.org
This paper describes the sequencing protocol and computational pipeline for the PGV-001
personalized vaccine trial. PGV-001 is a therapeutic peptide vaccine targeting neoantigens …
personalized vaccine trial. PGV-001 is a therapeutic peptide vaccine targeting neoantigens …
[PDF][PDF] Mutations in an innate immunity pathway are associated with poor overall survival outcomes and hypoxic signaling in cancer
Complement-mediated cytotoxicity may act as a selective pressure for tumor overexpression
of complement regulators. We hypothesize that the same selective pressure could lead to …
of complement regulators. We hypothesize that the same selective pressure could lead to …
OpenVax: an open-source computational pipeline for cancer neoantigen prediction
J Kodysh, A Rubinsteyn - Bioinformatics for Cancer Immunotherapy …, 2020 - Springer
OpenVax is a computational workflow for identifying somatic variants, predicting neoantigens,
and selecting the contents of personalized cancer vaccines. It is a Dockerized end-to-end …
and selecting the contents of personalized cancer vaccines. It is a Dockerized end-to-end …
[HTML][HTML] Association between incidental pelvic inflammation and aggressive prostate cancer
Simple Summary This study reports a significant association of pelvic inflammation with
prostate cancer (PCa) aggressiveness in a large cohort of men undergoing robot-assisted …
prostate cancer (PCa) aggressiveness in a large cohort of men undergoing robot-assisted …