User profiles for J. Noorbakhsh

Javad Noorbakhsh

Principal Scientist, Kojin Therapeutics
Verified email at bu.edu
Cited by 1046

Longitudinal molecular trajectories of diffuse glioma in adults

…, SP Niclou, JM Niers, H Noushmehr, J Noorbakhsh… - Nature, 2019 - nature.com
The evolutionary processes that drive universal therapeutic resistance in adult patients with
diffuse glioma remain unclear 1 , 2 . Here we analysed temporally separated DNA-…

Computational estimation of quality and clinical relevance of cancer cell lines

…, J Noorbakhsh, F Vazquez, J McFarland… - Molecular Systems …, 2022 - embopress.org
Immortal cancer cell lines (CCLs) are the most widely used system for investigating cancer
biology and for the preclinical development of oncology therapies. Pharmacogenomic and …

Repeat expansions confer WRN dependence in microsatellite-unstable cancers

…, F Belinky, V Tripathi, N Wong, K Foster, J Noorbakhsh… - Nature, 2020 - nature.com
The RecQ DNA helicase WRN is a synthetic lethal target for cancer cells with microsatellite
instability (MSI), a form of genetic hypermutability that arises from impaired mismatch repair 1 …

[HTML][HTML] Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

J Noorbakhsh, S Farahmand, A Foroughi Pour… - Nature …, 2020 - nature.com
… We define \(A_{i,j} = 1\), if cancer types i and j have the same phenotype (eg both are … and
\(A_{i,j} = 0\) otherwise. For weights, we set \(W_{i,j} = 1\) if cancer types i and j are immediately …

CamDavidsonPilon/lifelines: v0. 21.0

…, J Noorbakhsh, A Klintberg, J Rose, J Kaluzka… - …, 2021 - ui.adsabs.harvard.edu
0.21. 0 New features weights is now a optional kwarg for parametric univariate models. all
univariate and multivariate parametric models now have ability to handle left, right and interval …

[HTML][HTML] CCNE1 amplification is associated with poor prognosis in patients with triple negative breast cancer

…, KE Hutchinson, SM Li, YC Yuan, J Noorbakhsh… - BMC cancer, 2019 - Springer
Background Triple negative breast cancer (TNBC) is aggressive with limited treatment options
upon recurrence. Molecular discordance between primary and metastatic TNBC has been …

From intracellular signaling to population oscillations: bridging size‐and time‐scales in collective behavior

AE Sgro, DJ Schwab, J Noorbakhsh… - Molecular systems …, 2015 - embopress.org
… Plotting the population firing rate in terms of ρ/J results in a data collapse for sufficiently large
J, and we find good agreement between the model‐predicted firing rate dependence on ρ/J

[HTML][HTML] Two-dimensionality of yeast colony expansion accompanied by pattern formation

L Chen, J Noorbakhsh, RM Adams… - PLoS computational …, 2014 - journals.plos.org
Yeasts can form multicellular patterns as they expand on agar plates, a phenotype that
requires a functional copy of the FLO11 gene. Although the biochemical and molecular …

Modeling oscillations and spiral waves in Dictyostelium populations

J Noorbakhsh, DJ Schwab, AE Sgro, T Gregor, P Mehta - Physical Review E, 2015 - APS
… The dashed line is the leftmost line with constant J that intersects with the black curve. We
have called the value of J on this line Jm. The inset is population firing rate as a function of ρ/J, …

[HTML][HTML] High-throughput deconvolution of 3D organoid dynamics at cellular resolution for cancer pharmacology with Cellos

…, P Kumar, DJ Mellert, S Nicholas, J Noorbakhsh… - Nature …, 2023 - nature.com
Three-dimensional (3D) organoid cultures are flexible systems to interrogate cellular growth,
morphology, multicellular spatial architecture, and cellular interactions in response to …