User profiles for John Huddleston

John Huddleston

Fred Hutchinson Cancer Research Center
Verified email at fredhutch.org
Cited by 16511

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

…, C Heiner, A Clum, A Copeland, J Huddleston… - Nature …, 2013 - nature.com
We present a hierarchical genome-assembly process (HGAP) for high-quality de novo microbial
genome assemblies using only a single, long-insert shotgun DNA library in conjunction …

Nextstrain: real-time tracking of pathogen evolution

J Hadfield, C Megill, SM Bell, J Huddleston… - …, 2018 - academic.oup.com
Understanding the spread and evolution of pathogens is important for effective public health
measures and surveillance. Nextstrain consists of a database of viral genomes, a …

[HTML][HTML] An integrated map of structural variation in 2,504 human genomes

…, EJ Gardner, RE Handsaker, A Abyzov, J Huddleston… - Nature, 2015 - nature.com
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …

[PDF][PDF] Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition

…, E Binshtein, AN Loes, SK Hilton, J Huddleston… - Cell host & …, 2021 - cell.com
Antibodies targeting the SARS-CoV-2 spike receptor-binding domain (RBD) are being developed
as therapeutics and are a major contributor to neutralizing antibody responses elicited …

Resolving the complexity of the human genome using single-molecule sequencing

MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant… - Nature, 2015 - nature.com
The human genome is arguably the most complete mammalian reference assembly 1 , 2 , 3
, yet more than 160 euchromatic gaps remain 4 , 5 , 6 and aspects of its structural variation …

Cryptic transmission of SARS-CoV-2 in Washington state

…, J Hadfield, EB Hodcroft, J Huddleston… - Science, 2020 - science.org
After its emergence in Wuhan, China, in late November or early December 2019, the severe
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. …

Discovery and genotyping of structural variation from long-read haploid genome sequence data

J Huddleston, MJP Chaisson, KM Steinberg… - Genome …, 2017 - genome.cshlp.org
In an effort to more fully understand the full spectrum of human genetic variation, we
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid human …

[PDF][PDF] Genome sequencing of autism-affected families reveals disruption of putative noncoding regulatory DNA

…, MC Zody, BJ Nelson, J Huddleston… - The American Journal of …, 2016 - cell.com
We performed whole-genome sequencing (WGS) of 208 genomes from 53 families affected
by simplex autism. For the majority of these families, no copy-number variant (CNV) or …

Global diversity, population stratification, and selection of human copy-number variation

…, BJ Nelson, F Hormozdiari, N Krumm, J Huddleston… - Science, 2015 - science.org
INTRODUCTION Most studies of human genetic variation have focused on single-nucleotide
variants (SNVs). However, copy-number variants (CNVs) affect more base pairs of DNA …

[HTML][HTML] Gibbon genome and the fast karyotype evolution of small apes

…, KR Veeramah, B Lorente-Galdos, J Huddleston… - Nature, 2014 - nature.com
Gibbons are small arboreal apes that display an accelerated rate of evolutionary chromosomal
rearrangement and occupy a key node in the primate phylogeny between Old World …