User profiles for John Huddleston
John HuddlestonFred Hutchinson Cancer Research Center Verified email at fredhutch.org Cited by 16511 |
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
We present a hierarchical genome-assembly process (HGAP) for high-quality de novo microbial
genome assemblies using only a single, long-insert shotgun DNA library in conjunction …
genome assemblies using only a single, long-insert shotgun DNA library in conjunction …
Nextstrain: real-time tracking of pathogen evolution
Understanding the spread and evolution of pathogens is important for effective public health
measures and surveillance. Nextstrain consists of a database of viral genomes, a …
measures and surveillance. Nextstrain consists of a database of viral genomes, a …
[HTML][HTML] An integrated map of structural variation in 2,504 human genomes
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …
nucleotides among human genomes. Here we describe an integrated set of eight structural …
[PDF][PDF] Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition
Antibodies targeting the SARS-CoV-2 spike receptor-binding domain (RBD) are being developed
as therapeutics and are a major contributor to neutralizing antibody responses elicited …
as therapeutics and are a major contributor to neutralizing antibody responses elicited …
Resolving the complexity of the human genome using single-molecule sequencing
The human genome is arguably the most complete mammalian reference assembly 1 , 2 , 3
, yet more than 160 euchromatic gaps remain 4 , 5 , 6 and aspects of its structural variation …
, yet more than 160 euchromatic gaps remain 4 , 5 , 6 and aspects of its structural variation …
Cryptic transmission of SARS-CoV-2 in Washington state
After its emergence in Wuhan, China, in late November or early December 2019, the severe
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. …
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. …
Discovery and genotyping of structural variation from long-read haploid genome sequence data
In an effort to more fully understand the full spectrum of human genetic variation, we
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid human …
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid human …
[PDF][PDF] Genome sequencing of autism-affected families reveals disruption of putative noncoding regulatory DNA
…, MC Zody, BJ Nelson, J Huddleston… - The American Journal of …, 2016 - cell.com
We performed whole-genome sequencing (WGS) of 208 genomes from 53 families affected
by simplex autism. For the majority of these families, no copy-number variant (CNV) or …
by simplex autism. For the majority of these families, no copy-number variant (CNV) or …
Global diversity, population stratification, and selection of human copy-number variation
INTRODUCTION Most studies of human genetic variation have focused on single-nucleotide
variants (SNVs). However, copy-number variants (CNVs) affect more base pairs of DNA …
variants (SNVs). However, copy-number variants (CNVs) affect more base pairs of DNA …
[HTML][HTML] Gibbon genome and the fast karyotype evolution of small apes
Gibbons are small arboreal apes that display an accelerated rate of evolutionary chromosomal
rearrangement and occupy a key node in the primate phylogeny between Old World …
rearrangement and occupy a key node in the primate phylogeny between Old World …