User profiles for Jonathan A. Eisen

Jonathan A. Eisen

Professor, University of California, Davis (UC Davis), Department of Evolution and Ecology
Verified email at ucdavis.edu
Cited by 94379

[HTML][HTML] Genome sequence of the human malaria parasite Plasmodium falciparum

…, KE Nelson, S Bowman, IT Paulsen, K James, JA Eisen… - Nature, 2002 - nature.com
The parasite Plasmodium falciparum is responsible for hundreds of millions of cases of malaria,
and kills more than one million African children annually. Here we report an analysis of …

Environmental genome shotgun sequencing of the Sargasso Sea

…, JF Heidelberg, AL Halpern, D Rusch, JA Eisen… - science, 2004 - science.org
We have applied “whole-genome shotgun sequencing” to microbial populations collected
en masse on tangential flow and impact filters from seawater samples collected from the …

[HTML][HTML] The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

…, S Williamson, S Yooseph, D Wu, JA Eisen… - PLoS …, 2007 - journals.plos.org
The world's oceans contain a complex mixture of micro-organisms that are for the most part,
uncharacterized both genetically and biochemically. We report here a metagenomic study of …

[HTML][HTML] DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

JF Heidelberg, JA Eisen, WC Nelson, RA Clayton… - Nature, 2000 - nature.com
Here we determine the complete genomic sequence of the Gram negative, γ-Proteobacterium
Vibrio cholerae El Tor N16961 to be 4,033,460 base pairs (bp). The genome consists of …

Structure, variation, and assembly of the root-associated microbiomes of rice

…, S Bhatnagar, JA Eisen… - Proceedings of the …, 2015 - National Acad Sciences
Plants depend upon beneficial interactions between roots and microbes for nutrient availability,
growth promotion, and disease suppression. High-throughput sequencing approaches …

[HTML][HTML] Insights into the phylogeny and coding potential of microbial dark matter

…, BP Hedlund, G Tsiamis, SM Sievert, WT Liu, JA Eisen… - Nature, 2013 - nature.com
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However, …

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

…, J Heidelberg, GG Sutton, RD Fleischmann, JA Eisen… - Nature, 1999 - nature.com
The 1,860,725-base-pair genome of Thermotoga maritima MSB8 contains 1,877 predicted
coding regions, 1,014 (54%) of which have functional assignments and 863 (46%) of which …

Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

H Tettelin, KE Nelson, IT Paulsen, JA Eisen, TD Read… - Science, 2001 - science.org
The 2,160,837–base pair genome sequence of an isolate of Streptococcus pneumoniae, a
Gram-positive pathogen that causes pneumonia, bacteremia, meningitis, and otitis media, …

Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58

…, J Heidelberg, AC Jeffries, KE Nelson, JA Eisen… - Science, 2000 - science.org
The 2,272,351–base pair genome of Neisseria meningitidis strain MC58 (serogroup B), a
causative agent of meningitis and septicemia, contains 2158 predicted coding regions, 1158 (…

[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

…, WT Liu, BJ Baker, T Rattei, JA Eisen… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …