[HTML][HTML] KBase: the United States department of energy systems biology knowledgebase
Although similar integrative tools exist (Supplementary Note 2), no other open platform
shares all KBase’s features, which include the following:(i) comprehensive support for data …
shares all KBase’s features, which include the following:(i) comprehensive support for data …
MG-RAST, a metagenomics service for analysis of microbial community structure and function
Approaches in molecular biology, particularly those that deal with high-throughput sequencing
of entire microbial communities (the field of metagenomics), are rapidly advancing our …
of entire microbial communities (the field of metagenomics), are rapidly advancing our …
A dynamic role for the mushroom bodies in promoting sleep in Drosophila
JL Pitman, JJ McGill, KP Keegan, R Allada - Nature, 2006 - nature.com
The fruitfly, Drosophila melanogaster, exhibits many of the cardinal features of sleep, yet little
is known about the neural circuits governing its sleep 1 . Here we have performed a screen …
is known about the neural circuits governing its sleep 1 . Here we have performed a screen …
Structure, fluctuation and magnitude of a natural grassland soil metagenome
TO Delmont, E Prestat, KP Keegan… - The ISME …, 2012 - academic.oup.com
The soil ecosystem is critical for human health, affecting aspects of the environment from key
agricultural and edaphic parameters to critical influence on climate change. Soil has more …
agricultural and edaphic parameters to critical influence on climate change. Soil has more …
The MG-RAST metagenomics database and portal in 2015
…, E Glass, T Harrison, KP Keegan… - Nucleic acids …, 2016 - academic.oup.com
MG-RAST ( http://metagenomics.anl.gov ) is an open-submission data portal for processing,
analyzing, sharing and disseminating metagenomic datasets. The system currently hosts …
analyzing, sharing and disseminating metagenomic datasets. The system currently hosts …
Locomotor activity level monitoring using the Drosophila Activity Monitoring (DAM) System
…, BC Lear, KP Keegan… - Cold Spring Harbor …, 2010 - cshprotocols.cshlp.org
Adult behavioral assays have been used with great success in Drosophila melanogaster to
identify circadian rhythm genes. In particular, the locomotor activity assay can identify altered …
identify circadian rhythm genes. In particular, the locomotor activity assay can identify altered …
[HTML][HTML] Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants
EC Claud, KP Keegan, JM Brulc, L Lu, D Bartels… - Microbiome, 2013 - Springer
Background Preterm infants represent a unique patient population that is born functionally
immature and must accomplish development under the influence of a hospital environment. …
immature and must accomplish development under the influence of a hospital environment. …
[HTML][HTML] Clockwork orange encodes a transcriptional repressor important for circadian-clock amplitude in Drosophila
…, JL Pitman, JJ McGill, S Pradhan, J Lee, KP Keegan… - Current Biology, 2007 - cell.com
Gene transcription is a central timekeeping process in animal clocks. In Drosophila, the
basic helix-loop helix (bHLH)-PAS transcription-factor heterodimer, CLOCK/CYCLE (CLK/CYC), …
basic helix-loop helix (bHLH)-PAS transcription-factor heterodimer, CLOCK/CYCLE (CLK/CYC), …
[HTML][HTML] Drosophila clock can generate ectopic circadian clocks
J Zhao, VL Kilman, KP Keegan, Y Peng, P Emery… - Cell, 2003 - cell.com
Circadian rhythms of behavior, physiology, and gene expression are present in diverse
tissues and organisms. The function of the transcriptional activator, Clock, is necessary in both …
tissues and organisms. The function of the transcriptional activator, Clock, is necessary in both …
[HTML][HTML] Meta-Analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes
KP Keegan, S Pradhan, JP Wang… - PLoS computational …, 2007 - journals.plos.org
… (Independent reproduction of the technique by two parties [Keegan and McDonald] identified
136 probe sets, these include 132 of the originally reported 135 probe sets, and four probe …
136 probe sets, these include 132 of the originally reported 135 probe sets, and four probe …