User profiles for K. Dinkla
Kasper DinklaIBM Research Verified email at zurich.ibm.com Cited by 1483 |
[HTML][HTML] HiGlass: web-based visual exploration and analysis of genome interaction maps
We present HiGlass, an open source visualization tool built on web technologies that
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …
[HTML][HTML] DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection
…, JK Kirk, A Henningham, JD McArthur, K Dinkla… - Nature medicine, 2007 - nature.com
Most invasive bacterial infections are caused by species that more commonly colonize the
human host with minimal symptoms. Although phenotypic or genetic correlates underlying a …
human host with minimal symptoms. Although phenotypic or genetic correlates underlying a …
[HTML][HTML] Rheumatic fever–associated Streptococcus pyogenes isolates aggregate collagen
K Dinkla, M Rohde, WTM Jansen… - The Journal of …, 2003 - Am Soc Clin Investig
… However, commercial (dry, denatured) HA did not competitively block collagen binding at
all after reconstitution in solution (K. Dinkla, unpublished observations). This may be due to …
all after reconstitution in solution (K. Dinkla, unpublished observations). This may be due to …
Kelp diagrams: Point set membership visualization
K Dinkla, MJ Van Kreveld, B Speckmann… - Computer Graphics …, 2012 - Wiley Online Library
We present Kelp Diagrams, a novel method to depict set relations over points, ie, elements
with predefined positions. Our method creates schematic drawings and has been designed to …
with predefined positions. Our method creates schematic drawings and has been designed to …
P159 is a proteolytically processed, surface adhesin of Mycoplasma hyopneumoniae: defined domains of P159 bind heparin and promote adherence to eukaryote …
TA Burnett, K Dinkla, M Rohde… - Molecular …, 2006 - Wiley Online Library
… purification of four recombinant proteins spanning P159 (F1 P159 , F2 P159 , F3 P159
and F4 P159 ), only F3 P159 and F4 P159 bound heparin in a dose‐dependent manner (K d …
and F4 P159 ), only F3 P159 and F4 P159 bound heparin in a dose‐dependent manner (K d …
M protein mediated plasminogen binding is essential for the virulence of an invasive Streptococcus pyogenes isolate
ML Sanderson-Smith, K Dinkla, JN Cole, AJ Cork… - 2008 - ro.uow.edu.au
The human protease plasmin plays a crucial role in the capacity of the group A streptococcus
(Streptococus pyogenes; GAS) to initiate invasive disease. The GAS strain NS88. 2 was …
(Streptococus pyogenes; GAS) to initiate invasive disease. The GAS strain NS88. 2 was …
Streptococcus pyogenes recruits collagen via surface‐bound fibronectin: a novel colonization and immune evasion mechanism
K Dinkla, M Rohde, WTM Jansen… - Molecular …, 2003 - Wiley Online Library
… M49, the parental Cpa-expressing strain, did not bind or recruit soluble CIV or CI, and direct
binding strains as well as the majority of the recruiting isolates lack the cpa gene (K. Dinkla, …
binding strains as well as the majority of the recruiting isolates lack the cpa gene (K. Dinkla, …
Compressed adjacency matrices: Untangling gene regulatory networks
K Dinkla, MA Westenberg… - IEEE Transactions on …, 2012 - ieeexplore.ieee.org
We present a novel technique-Compressed Adjacency Matrices-for visualizing gene
regulatory networks. These directed networks have strong structural characteristics: out-degrees …
regulatory networks. These directed networks have strong structural characteristics: out-degrees …
[HTML][HTML] Upregulation of capsule enables Streptococcus pyogenes to evade immune recognition by antigen-specific antibodies directed to the G-related α2 …
K Dinkla, I Sastalla, AW Godehardt, N Janze… - Microbes and …, 2007 - Elsevier
One of the major problems associated with the development of a vaccine against Streptococcus
pyogenes is the ability of this pathogen to escape recognition by antibodies directed …
pyogenes is the ability of this pathogen to escape recognition by antibodies directed …
[HTML][HTML] Crucial role of the CB3-region of collagen IV in PARF-induced acute rheumatic fever
K Dinkla, SR Talay, M Mörgelin, RMA Graham… - PLoS …, 2009 - journals.plos.org
… 2D), with apparent dissociation constants of K d = 5×10 −9 M and K d = 6×10 −8 M,
respectively. Taken together the results demonstrate a direct and specific interaction between M3-…
respectively. Taken together the results demonstrate a direct and specific interaction between M3-…