User profiles for K. Farh

Kyle Kai-How Farh

Principal Investigator, Illumina AI Lab
Verified email at illumina.com
Cited by 46886

Analysis of shared heritability in common disorders of the brain

…, C Cruchaga, M Alegret, B Winsvold, P Palta, KH Farh… - Science, 2018 - science.org
INTRODUCTION Brain disorders may exhibit shared symptoms and substantial epidemiological
comorbidity, inciting debate about their etiologic overlap. However, detailed study of …

[HTML][HTML] Integrative analysis of 111 reference human epigenomes

…, PJ Sabo, MS Bansal, A Carles, JR Dixon, KH Farh… - Nature, 2015 - nature.com
The reference human genome sequence set the stage for studies of genetic variation and
its association with human disease, but epigenomic studies lack a similar reference. To …

[PDF][PDF] MicroRNA targeting specificity in mammals: determinants beyond seed pairing

A Grimson, KKH Farh, WK Johnston, P Garrett-Engele… - Molecular cell, 2007 - cell.com
Mammalian microRNAs (miRNAs) pair to 3′UTRs of mRNAs to direct their posttranscriptional
repression. Important for target recognition are ∼7 nt sites that match the seed region of …

Most mammalian mRNAs are conserved targets of microRNAs

RC Friedman, KKH Farh, CB Burge… - Genome research, 2009 - genome.cshlp.org
… First, we matched control k-mers using an expected conservation based on both the k-mer’s
GC content and the expected conservation of its constituent dinucleotides, which enabled a …

Partitioning heritability by functional annotation using genome-wide association summary statistics

…, Y Reshef, PR Loh, V Anttila, H Xu, C Zang, K Farh… - Nature …, 2015 - nature.com
Recent work has demonstrated that some functional categories of the genome contribute
disproportionately to the heritability of complex diseases. Here we analyze a broad set of …

The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

KKH Farh, A Grimson, C Jan, BP Lewis, WK Johnston… - Science, 2005 - science.org
Thousands of mammalian messenger RNAs are under selective pressure to maintain 7-nucleotide
sites matching microRNAs (miRNAs). We found that these conserved targets are …

Genetic and epigenetic fine mapping of causal autoimmune disease variants

KKH Farh, A Marson, J Zhu, M Kleinewietfeld… - Nature, 2015 - nature.com
Genome-wide association studies have identified loci underlying human diseases, but the
causal nucleotide changes and mechanisms remain largely unknown. Here we developed a …

[PDF][PDF] Modeling linkage disequilibrium increases accuracy of polygenic risk scores

…, BM Neale, A Corvin, JTR Walters, KH Farh… - The american journal of …, 2015 - cell.com
Polygenic risk scores have shown great promise in predicting complex disease risk and will
become more accurate as training sample sizes increase. The standard approach for …

[PDF][PDF] Predicting splicing from primary sequence with deep learning

…, H Gao, A Kia, S Batzoglou, SJ Sanders, KKH Farh - Cell, 2019 - cell.com
… Top-k accuracy is the fraction of correctly predicted splice sites … We also show the top-k
accuracy and PR-AUC for three … in k GTEx individuals, we picked a random subset of k GTEx …

Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects

…, V Escott-Price, L Essioux, AH Fanous, KH Farh… - Nature …, 2017 - nature.com
Copy number variants (CNVs) have been strongly implicated in the genetic etiology of
schizophrenia (SCZ). However, genome-wide investigation of the contribution of CNV to risk has …