User profiles for K. Mizuguchi

Kenji Mizuguchi

Osaka University / National Institutes of Biomedical Innovation, Health and Nutrition
Verified email at protein.osaka-u.ac.jp
Cited by 10616

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

J Shi, TL Blundell, K Mizuguchi - Journal of molecular biology, 2001 - Elsevier
… The cost for the insertion of length k starting at position p is defined as:(9) G i (p,k)=G p i,i
+(k−1)×G p i,e There are four categories of insertion according to its position relative to …

A novel superfamily of enzymes that catalyze the modification of guanidino groups

H Shirai, TL Blundell, K Mizuguchi - Trends in biochemical sciences, 2001 - cell.com
Three enzymes, peptidyl-arginine deiminase from Porphyromonas gingivalis, arginine
deiminase and amidinotransferase are traditionally classified separately. By combining PSI-…

Network analysis and in silico prediction of protein–protein interactions with applications in drug discovery

…, LP Tripathi, P Prathipati, K Mizuguchi - Current opinion in …, 2017 - Elsevier
Highlights • Protein–protein interactions (PPIs) have emerged as promising targets for drug
discovery. • PPI network (PPIN)-based analyses can reveal genotype–phenotype …

Disrupted in Schizophrenia 1 Interactome: evidence for the close connectivity of risk genes and a potential synaptic basis for schizophrenia

LM Camargo, V Collura, JC Rain, K Mizuguchi… - Molecular …, 2007 - nature.com
Disrupted in Schizophrenia 1 (DISC1) is a schizophrenia risk gene associated with cognitive
deficits in both schizophrenics and the normal ageing population. In this study, we have …

[HTML][HTML] Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota

…, H Takeyama, A Matsutani, K Mizuguchi… - Nature …, 2022 - nature.com
The gut microbiome is an important determinant in various diseases. Here we perform a
cross-sectional study of Japanese adults and identify the Blautia genus, especially B. wexlerae, …

Fault lubrication during earthquakes

…, R Han, T Hirose, N De Paola, S Nielsen, K Mizoguchi… - Nature, 2011 - nature.com
… Because k varies with for a given power density, τ e V (equation (2)), for each rock type we
plotted curves of reaction speed constant for the highest and lowest values of (Methods). In b, …

HOMSTRAD: a database of protein structure alignments for homologous families

K Mizuguchi, CM Deane, TL Blundell… - Protein …, 1998 - Wiley Online Library
We describe a database of protein structure alignments for homologous families. The database
HOMSTRAD presently contains 130 protein families and 590 aligned structures, which …

β3: an additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics

…, PJ Richardson, K Mizuguchi… - Proceedings of the …, 2000 - National Acad Sciences
The voltage-sensitive sodium channel confers electrical excitability on neurons, a fundamental
property required for higher processes including cognition. The ion-conducting α-subunit …

[HTML][HTML] FlyMine: an integrated database for Drosophila and Anopheles genomics

…, K Lilley, S Russell, M Ashburner, K Mizuguchi… - Genome biology, 2007 - Springer
… also been incorporated, such as RNAi data, orthologue data generated by InParanoid [45,
46] and three-dimensional protein structural domain predictions (K Mizuguchi, unpublished). …

JOY: protein sequence-structure representation and analysis.

K Mizuguchi, CM Deane, TL Blundell… - Bioinformatics …, 1998 - academic.oup.com
… us to identify several key residues including this glutamine, which are conserved in these
proteins, and this led to a hypothesis that Spätzle is also a member of this family (Mizuguchi et …