User profiles for L. J. Jensen

Lars Juhl Jensen

University of Copenhagen
Verified email at cpr.ku.dk
Cited by 103642

Mining electronic health records: towards better research applications and clinical care

PB Jensen, LJ Jensen, S Brunak - Nature Reviews Genetics, 2012 - nature.com
Clinical data describing the phenotypes and treatment of patients represents an underused
data source that has much greater research potential than is currently realized. Mining of …

Literature mining for the biologist: from information retrieval to biological discovery

LJ Jensen, J Saric, P Bork - Nature reviews genetics, 2006 - nature.com
For the average biologist, hands-on literature mining currently means a keyword search in
PubMed. However, methods for extracting biomedical facts from the scientific literature have …

STRING 7—recent developments in the integration and prediction of protein interactions

C Von Mering, LJ Jensen, M Kuhn… - Nucleic acids …, 2007 - academic.oup.com
Abstract Information on protein–protein interactions is still mostly limited to a small number
of model organisms, and originates from a wide variety of experimental and computational …

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

…, NT Doncheva, A Roth, P Bork, LJ Jensen… - Nucleic acids …, 2016 - academic.oup.com
A system-wide understanding of cellular function requires knowledge of all functional
interactions between the expressed proteins. The STRING database aims to collect and integrate …

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

…, M Legeay, T Fang, P Bork, LJ Jensen… - Nucleic acids …, 2021 - academic.oup.com
Cellular life depends on a complex web of functional associations between biomolecules.
Among these associations, protein–protein interactions are particularly important due to their …

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

…, JH Morris, P Bork, LJ Jensen… - Nucleic acids …, 2019 - academic.oup.com
Proteins and their functional interactions form the backbone of the cellular machinery. Their
connectivity network needs to be considered for the full understanding of biological …

STRING v10: protein–protein interaction networks, integrated over the tree of life

…, KP Tsafou, M Kuhn, P Bork, LJ Jensen… - Nucleic acids …, 2015 - academic.oup.com
The many functional partnerships and interactions that occur between proteins are at the
core of cellular processing and their systematic characterization helps to provide context in …

The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

…, S Pyysalo, P Bork, LJ Jensen… - Nucleic acids …, 2023 - academic.oup.com
Much of the complexity within cells arises from functional and regulatory interactions among
proteins. The core of these interactions is increasingly known, but novel interactions …

STRING 8—a global view on proteins and their functional interactions in 630 organisms

LJ Jensen, M Kuhn, M Stark, S Chaffron… - Nucleic acids …, 2009 - academic.oup.com
Functional partnerships between proteins are at the core of complex cellular phenotypes,
and the networks formed by interacting proteins provide researchers with crucial scaffolds for …

STRING v9. 1: protein-protein interaction networks, with increased coverage and integration

…, P Bork, C Von Mering, LJ Jensen - Nucleic acids …, 2012 - academic.oup.com
Complete knowledge of all direct and indirect interactions between proteins in a given cell
would represent an important milestone towards a comprehensive description of cellular …