[HTML][HTML] The effects of death and post-mortem cold ischemia on human tissue transcriptomes
Post-mortem tissues samples are a key resource for investigating patterns of gene expression.
However, the processes triggered by death and the post-mortem interval (PMI) can …
However, the processes triggered by death and the post-mortem interval (PMI) can …
A comparison of mechanistic signaling pathway activity analysis methods
Understanding the aspects of cell functionality that account for disease mechanisms or drug
modes of action is a main challenge for precision medicine. Classical gene-based …
modes of action is a main challenge for precision medicine. Classical gene-based …
[HTML][HTML] Functional signatures in non-small-cell lung cancer: a systematic review and meta-analysis of sex-based differences in transcriptomic studies
I Pérez-Díez, MR Hidalgo, P Malmierca-Merlo… - Cancers, 2021 - mdpi.com
Simple Summary Differences in epidemiological and clinical patterns of lung adenocarcinoma
have been described between male and female patients. Our study aimed to assess the …
have been described between male and female patients. Our study aimed to assess the …
[HTML][HTML] A Comprehensive Transcriptional Signature in Pancreatic Ductal Adenocarcinoma Reveals New Insights into the Immune and Desmoplastic …
I Pérez-Díez, Z Andreu, MR Hidalgo… - Cancers, 2023 - mdpi.com
Simple Summary Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal disease with
a few curative options. Desmoplastic stroma and immune system evasion in PDAC represent …
a few curative options. Desmoplastic stroma and immune system evasion in PDAC represent …
Babelomics 5.0: functional interpretation for new generations of genomic data
…, R Sanchez, C Cubuk, MR Hidalgo… - Nucleic acids …, 2015 - academic.oup.com
Babelomics has been running for more than one decade offering a user-friendly interface
for the functional analysis of gene expression and genomic data. Here we present its fifth …
for the functional analysis of gene expression and genomic data. Here we present its fifth …
[HTML][HTML] High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes
Understanding the aspects of the cell functionality that account for disease or drug action
mechanisms is a main challenge for precision medicine. Here we propose a new method that …
mechanisms is a main challenge for precision medicine. Here we propose a new method that …
[HTML][HTML] Unveiling sex-based differences in Parkinson's disease: a comprehensive meta-analysis of transcriptomic studies
A López-Cerdán, Z Andreu, MR Hidalgo… - Biology of Sex …, 2022 - Springer
In recent decades, increasing longevity (among other factors) has fostered a rise in Parkinson's
disease incidence. Although not exhaustively studied in this devastating disease, the …
disease incidence. Although not exhaustively studied in this devastating disease, the …
Gene expression integration into pathway modules reveals a pan-cancer metabolic landscape
Metabolic reprogramming plays an important role in cancer development and progression
and is a well-established hallmark of cancer. Despite its inherent complexity, cellular …
and is a well-established hallmark of cancer. Despite its inherent complexity, cellular …
[HTML][HTML] A deep transcriptome meta-analysis reveals sex differences in multiple sclerosis
JF Català-Senent, Z Andreu, MR Hidalgo… - Neurobiology of …, 2023 - Elsevier
Background Multiple sclerosis (MS), a chronic auto-immune, inflammatory, and degenerative
disease of the central nervous system, affects both males and females; however, females …
disease of the central nervous system, affects both males and females; however, females …
[HTML][HTML] Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models
In spite of the increasing availability of genomic and transcriptomic data, there is still a gap
between the detection of perturbations in gene expression and the understanding of their …
between the detection of perturbations in gene expression and the understanding of their …