User profiles for M. S. Klausen

Michael Schantz Klausen

Technical University of Denmark
Verified email at ntz.nu
Cited by 833

NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning

MS Klausen, MC Jespersen, H Nielsen… - Proteins: Structure …, 2019 - Wiley Online Library
The ability to predict local structural features of a protein from the primary sequence is of
paramount importance for unraveling its function in absence of experimental structural …

Predictable tuning of protein expression in bacteria

MT Bonde, M Pedersen, MS Klausen, SI Jensen… - Nature …, 2016 - nature.com
We comprehensively assessed the contribution of the Shine-Dalgarno sequence to protein
expression and used the data to develop EMOPEC (Empirical Model and Oligos for Protein …

LYRA, a webserver for lymphocyte receptor structural modeling

MS Klausen, MV Anderson, MC Jespersen… - Nucleic Acids …, 2015 - academic.oup.com
The accurate structural modeling of B- and T-cell receptors is fundamental to gain a detailed
insight in the mechanisms underlying immunity and in developing new drugs and therapies. …

MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering

MT Bonde, MS Klausen, MV Anderson… - Nucleic acids …, 2014 - academic.oup.com
Recombineering and multiplex automated genome engineering (MAGE) offer the possibility
to rapidly modify multiple genomic or plasmid sites at high efficiencies. This enables efficient …

[HTML][HTML] Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

NH Thuesen, MS Klausen, S Gopalakrishnan… - Frontiers in …, 2022 - frontiersin.org
Identifying the specific human leukocyte antigen (HLA) allele combination of an individual is
crucial in organ donation, risk assessment of autoimmune and infectious diseases and …

[HTML][HTML] DNA immunization with in silico predicted T-cell epitopes protects against lethal SARS-CoV-2 infection in K18-hACE2 mice

…, JH Emdrup, S Schussek, MS Klausen… - Frontiers in …, 2023 - frontiersin.org
The global SARS-CoV-2 pandemic caused significant social and economic disruption
worldwide, despite highly effective vaccines being developed at an unprecedented speed. …

[HTML][HTML] First in man study: Bcl-Xl_42-CAF®09b vaccines in patients with locally advanced prostate cancer

…, GK Wood, D Christensen, MS Klausen… - Frontiers in …, 2023 - frontiersin.org
Background The B-cell lymphoma-extra-large (Bcl-XL) protein plays an important role in
cancer cells’ resistance to apoptosis. Pre-clinical studies have shown that vaccination with Bcl-…

Benchmarking freely available human leukocyte antigen typing algorithms across varying genes, coverages and typing resolutions

NH Thuesen, MS Klausen, S Gopalakrishnan, T Trolle… - bioRxiv, 2022 - biorxiv.org
The human leukocyte antigen (HLA) system is a group of genes coding for proteins that are
central to the adaptive immune system and identifying the specific HLA allele combination of …

Parts Characterization for Tunable Protein Expression

MS Klausen, MOA Sommer - Synthetic Metabolic Pathways: Methods and …, 2018 - Springer
Flow-seq combines flexible genome engineering methods with flow cytometry-based cell
sorting and deep DNA sequencing to enable comprehensive interrogation of genotype to …

Endogenous Retroviral Elements Constitute a Promising Vaccine Antigen Source for Haematological Malignancies

CB Thygesen, MS Klausen, N Thuesen, C Garde… - Blood, 2023 - Elsevier
Introduction Immunotherapy has revolutionized modern cancer treatment, both within the
fields of solid and haematology malignancies. The recent success of checkpoint inhibitor (CPI) …