The Perseus computational platform for comprehensive analysis of (prote) omics data
A main bottleneck in proteomics is the downstream biological analysis of highly multivariate
quantitative protein abundance data generated using mass-spectrometry-based analysis. …
quantitative protein abundance data generated using mass-spectrometry-based analysis. …
[HTML][HTML] Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
Protein quantification without isotopic labels has been a long-standing interest in the
proteomics field. However, accurate and robust proteome-wide quantification with label-free …
proteomics field. However, accurate and robust proteome-wide quantification with label-free …
The need for broader ecological and socioeconomic tools to evaluate the effectiveness of coral restoration programs
Coral reef restoration initiatives are burgeoning in response to the need for novel management
strategies to address dramatic global declines in coral cover. However, coral restoration …
strategies to address dramatic global declines in coral cover. However, coral restoration …
[HTML][HTML] A liquid-to-solid phase transition of the ALS protein FUS accelerated by disease mutation
Many proteins contain disordered regions of low-sequence complexity, which cause aging-associated
diseases because they are prone to aggregate. Here, we study FUS, a prion-like …
diseases because they are prone to aggregate. Here, we study FUS, a prion-like …
[PDF][PDF] A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response
Functional genomics efforts face tradeoffs between number of perturbations examined and
complexity of phenotypes measured. We bridge this gap with Perturb-seq, which combines …
complexity of phenotypes measured. We bridge this gap with Perturb-seq, which combines …
[PDF][PDF] A human interactome in three quantitative dimensions organized by stoichiometries and abundances
The organization of a cell emerges from the interactions in protein networks. The interactome
is critically dependent on the strengths of interactions and the cellular abundances of the …
is critically dependent on the strengths of interactions and the cellular abundances of the …
[HTML][HTML] Coral restoration and adaptation in Australia: The first five years
While coral reefs in Australia have historically been a showcase of conventional management
informed by research, recent declines in coral cover have triggered efforts to innovate and …
informed by research, recent declines in coral cover have triggered efforts to innovate and …
Decoding human cytomegalovirus
…, B Weisburd, A Michalski, VTK Le, MY Hein… - Science, 2012 - science.org
The human cytomegalovirus (HCMV) genome was sequenced 20 years ago. However, like
those of other complex viruses, our understanding of its protein coding potential is far from …
those of other complex viruses, our understanding of its protein coding potential is far from …
[HTML][HTML] A “proteomic ruler” for protein copy number and concentration estimation without spike-in standards
Absolute protein quantification using mass spectrometry (MS)-based proteomics delivers
protein concentrations or copy numbers per cell. Existing methodologies typically require a …
protein concentrations or copy numbers per cell. Existing methodologies typically require a …
OpenCell: Endogenous tagging for the cartography of human cellular organization
Elucidating the wiring diagram of the human cell is a central goal of the postgenomic era.
We combined genome engineering, confocal live-cell imaging, mass spectrometry, and data …
We combined genome engineering, confocal live-cell imaging, mass spectrometry, and data …