[HTML][HTML] The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

…, M Töpel, T Tonon, K Vanneste, M Amirebrahimi… - Nature, 2016 - nature.com
Seagrasses colonized the sea 1 on at least three independent occasions to form the basis
of one of the most productive and widespread coastal ecosystems on the planet 2 . Here we …

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

…, S Shu, D Sims, M Kennedy, M Amirebrahimi… - The Plant …, 2018 - Wiley Online Library
M single nucleotide polymorphisms ( SNP s) and 1.9 M indels. Large‐scale variant features
in euchromatin were identified with periodicities of approximately 25 kbp. A transcriptome …

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

…, TA Blauwkamp, CJ Castelle, M Amirebrahimi… - Genome …, 2015 - genome.cshlp.org
… We identified 376 distinct species in the sediments collected at the 4-m depth, 457 in the
5-m sample, and 233 in the 6-m sample. The lineages with the largest number of identified …

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

…, M Amirebrahimi, M Zane, M Wang… - Nucleic acids …, 2023 - academic.oup.com
Gene functional descriptions offer a crucial line of evidence for candidate genes underlying
trait variation. Conversely, plant responses to environmental cues represent important …

The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data

…, KK Ullrich, A Alboresi, M Amirebrahimi… - The Plant …, 2018 - Wiley Online Library
… Far-red light samples were grown under continuous 2 μmol m −2 … UV-B light samples
were grown under continuous 4 μmol m −2 s −1 white light supplemented with 1 μmol m −2 …

Acquisition of host-derived carbon in biomass of the ectomycorrhizal fungus Pisolithus microcarpus is correlated to fungal carbon demand and plant defences

EK Stuart, V Singan, M Amirebrahimi… - FEMS microbiology …, 2023 - academic.oup.com
Ectomycorrhizal (ECM) fungi are key players in forest carbon (C) sequestration, receiving a
substantial proportion of photosynthetic C from their forest tree hosts in exchange for plant …

The genome of Xylona heveae provides a window into fungal endophytism

…, R Riley, K LaButti, A Lipzen, J Lin, M Amirebrahimi… - Fungal biology, 2016 - Elsevier
Xylona heveae has only been isolated as an endophyte of rubber trees. In an effort to
understand the genetic basis of endophytism, we compared the genome contents of X. heveae …

[HTML][HTML] Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass …

…, PW Crous, JW Spatafora, K Lail, M Amirebrahimi… - IMA fungus, 2021 - Springer
Marine fungi remain poorly covered in global genome sequencing campaigns; the 1000
fungal genomes (1KFG) project attempts to shed light on the diversity, ecology and potential …

Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping

…, S Mamidi, C Chen, M Amirebrahimi… - The plant …, 2021 - Wiley Online Library
… -m rows with a distance of 0.3 m between rows within a randomized complete-block design.
… (Li & Durbin, 2009) and the -M flag default mapping parameters. A pileup file was generated …

An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots

…, O Novák, KW Barry, M Amirebrahimi… - Plant, cell & …, 2020 - Wiley Online Library
The phytohormones jasmonate, gibberellin, salicylate, and ethylene regulate an interconnected
reprogramming network integrating root development with plant responses against …