User profiles for M. Nicodemi
Mario NicodemiProfessor of Theoretical Physics, Università di Napoli "Federico II" Verified email at na.infn.it Cited by 8776 |
Slow relaxation and compaction of granular systems
Granular materials are of substantial importance in many industrial and natural processes,
yet their complex behaviours, ranging from mechanical properties of static packing to their …
yet their complex behaviours, ranging from mechanical properties of static packing to their …
Models of chromosome structure
M Nicodemi, A Pombo - Current opinion in cell biology, 2014 - Elsevier
Understanding the mechanisms that control chromosome folding in the nucleus of
eukaryotes and their contribution to gene regulation is a key open issue in molecular biology. …
eukaryotes and their contribution to gene regulation is a key open issue in molecular biology. …
Complex multi-enhancer contacts captured by genome architecture mapping
…, L Game, N Dillon, PAW Edwards, M Nicodemi… - Nature, 2017 - nature.com
The organization of the genome in the nucleus and the interactions of genes with their
regulatory elements are key features of transcriptional control and their disruption can cause …
regulatory elements are key features of transcriptional control and their disruption can cause …
Complexity of chromatin folding is captured by the strings and binders switch model
… We first demonstrate how c m affects the equilibrium compaction state of the polymer (Fig.
S2). The extent of polymer folding is captured by measuring the squared radius of gyration, , …
S2). The extent of polymer folding is captured by measuring the squared radius of gyration, , …
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
Mammalian chromosomes fold into arrays of megabase‐sized topologically associating
domains ( TAD s), which are arranged into compartments spanning multiple megabases of …
domains ( TAD s), which are arranged into compartments spanning multiple megabases of …
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
The CCCTC-binding factor (CTCF) works together with the cohesin complex to drive the
formation of chromatin loops and topologically associating domains, but its role in gene …
formation of chromatin loops and topologically associating domains, but its role in gene …
Challenges and guidelines toward 4D nucleome data and model standards
Due to recent advances in experimental and theoretical approaches, the dynamic three-dimensional
organization (3D) of the nucleus has become a very active area of research in life …
organization (3D) of the nucleus has become a very active area of research in life …
Universal fluctuations in correlated systems
The probability density function (PDF) of a global measure in a large class of highly correlated
systems has been suggested to be of the same functional form. Here, we identify the …
systems has been suggested to be of the same functional form. Here, we identify the …
[HTML][HTML] Cell-type specialization is encoded by specific chromatin topologies
The three-dimensional (3D) structure of chromatin is intrinsically associated with gene
regulation and cell function 1 , 2 – 3 . Methods based on chromatin conformation capture have …
regulation and cell function 1 , 2 – 3 . Methods based on chromatin conformation capture have …
[HTML][HTML] Polymer physics of chromosome large-scale 3D organisation
Chromosomes have a complex architecture in the cell nucleus, which serves vital functional
purposes, yet its structure and folding mechanisms remain still incompletely understood. …
purposes, yet its structure and folding mechanisms remain still incompletely understood. …