User profiles for N. L. Panchy

Nicholas Panchy

Research Consultant
Verified email at msu.edu
Cited by 1671

Factors influencing gene family size variation among related species in a plant family, Solanaceae

P Wang, BM Moore, NL Panchy, F Meng… - Genome biology and …, 2018 - academic.oup.com
Gene duplication and loss contribute to gene content differences as well as phenotypic
divergence across species. However, the extent to which gene content varies among closely …

High‐throughput measurement of plant fitness traits with an object detection method using Faster R‐CNN

…, F Meng, P Donaldson, S Horan, NL Panchy… - New …, 2022 - Wiley Online Library
Revealing the contributions of genes to plant phenotype is frequently challenging because
loss‐of‐function effects may be subtle or masked by varying degrees of genetic redundancy. …

[HTML][HTML] Changes in the daily rhythm of lipid metabolism in the diabetic retina

…, SN Bozack, TA Lydic, L Yan, NL Panchy… - PloS one, 2014 - journals.plos.org
Disruption of circadian regulation was recently shown to cause diabetes and metabolic
disease. We have previously demonstrated that retinal lipid metabolism contributed to the …

A model-based approach for identifying functional intergenic transcribed regions and noncoding RNAs

…, ZTY Tsai, RP Sowers, NL Panchy… - … Biology and Evolution, 2018 - academic.oup.com
With advances in transcript profiling, the presence of transcriptional activities in intergenic
regions has been well established. However, whether intergenic expression reflects …

[HTML][HTML] Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication

NL Panchy, CB Azodi, EF Winship, RC O'Malley… - BMC Evolutionary …, 2019 - Springer
Background Transcription factors (TFs) play a key role in regulating plant development and
response to environmental stimuli. While most genes revert to single copy after whole …

[HTML][HTML] Selection-enriched genomic loci (SEGL) reveals genetic loci for environmental adaptation and photosynthetic productivity in Chlamydomonas reinhardtii

BF Lucker, JA Temple, NL Panchy, UF Benning… - Algal Research, 2022 - Elsevier
This work demonstrates an approach to produce and select hybrid algal strains exhibiting
increased photosynthetic productivity under multiple environmental conditions. This …

Defining the functional significance of intergenic transcribed regions based on heterogeneous features of phenotype genes and pseudogenes

JP Lloyd, ZTY Tsai, RP Sowers, NL Panchy, SH Shiu - BioRxiv, 2017 - biorxiv.org
With advances in transcript profiling, the presence of transcriptional activities in intergenic
regions has been well established in multiple model systems. However, whether intergenic …

[HTML][HTML] Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data

NL Panchy, JP Lloyd, SH Shiu - BMC genomics, 2020 - Springer
Background Gene expression is regulated by DNA-binding transcription factors (TFs).
Together with their target genes, these factors and their interactions collectively form a gene …

High throughput measurement of Arabidopsis thaliana fitness traits using deep learning

P Wang, F Meng, P Donaldson, S Horan, NL Panchy… - bioRxiv, 2021 - biorxiv.org
Revealing the genetic effects of phenotypic variation is frequently challenging because of
genetic redundancy, condition-specific requirements for genes, and/or changes in physiology …

[BOOK][B] Investigating Complexity in Transcriptome Expression, Regulation, and Evolution Using Mathematical Modeling

NL Panchy - 2017 - search.proquest.com
… By Nicholas Louis Panchy To date, gene expression has been characterized in over one
thousand species across more than a million experimental conditions. With this wealth of data, …