User profiles for N. L. Panchy
Nicholas PanchyResearch Consultant Verified email at msu.edu Cited by 1671 |
Factors influencing gene family size variation among related species in a plant family, Solanaceae
Gene duplication and loss contribute to gene content differences as well as phenotypic
divergence across species. However, the extent to which gene content varies among closely …
divergence across species. However, the extent to which gene content varies among closely …
High‐throughput measurement of plant fitness traits with an object detection method using Faster R‐CNN
…, F Meng, P Donaldson, S Horan, NL Panchy… - New …, 2022 - Wiley Online Library
Revealing the contributions of genes to plant phenotype is frequently challenging because
loss‐of‐function effects may be subtle or masked by varying degrees of genetic redundancy. …
loss‐of‐function effects may be subtle or masked by varying degrees of genetic redundancy. …
[HTML][HTML] Changes in the daily rhythm of lipid metabolism in the diabetic retina
Disruption of circadian regulation was recently shown to cause diabetes and metabolic
disease. We have previously demonstrated that retinal lipid metabolism contributed to the …
disease. We have previously demonstrated that retinal lipid metabolism contributed to the …
A model-based approach for identifying functional intergenic transcribed regions and noncoding RNAs
With advances in transcript profiling, the presence of transcriptional activities in intergenic
regions has been well established. However, whether intergenic expression reflects …
regions has been well established. However, whether intergenic expression reflects …
[HTML][HTML] Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication
Background Transcription factors (TFs) play a key role in regulating plant development and
response to environmental stimuli. While most genes revert to single copy after whole …
response to environmental stimuli. While most genes revert to single copy after whole …
[HTML][HTML] Selection-enriched genomic loci (SEGL) reveals genetic loci for environmental adaptation and photosynthetic productivity in Chlamydomonas reinhardtii
This work demonstrates an approach to produce and select hybrid algal strains exhibiting
increased photosynthetic productivity under multiple environmental conditions. This …
increased photosynthetic productivity under multiple environmental conditions. This …
Defining the functional significance of intergenic transcribed regions based on heterogeneous features of phenotype genes and pseudogenes
With advances in transcript profiling, the presence of transcriptional activities in intergenic
regions has been well established in multiple model systems. However, whether intergenic …
regions has been well established in multiple model systems. However, whether intergenic …
[HTML][HTML] Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data
Background Gene expression is regulated by DNA-binding transcription factors (TFs).
Together with their target genes, these factors and their interactions collectively form a gene …
Together with their target genes, these factors and their interactions collectively form a gene …
High throughput measurement of Arabidopsis thaliana fitness traits using deep learning
P Wang, F Meng, P Donaldson, S Horan, NL Panchy… - bioRxiv, 2021 - biorxiv.org
Revealing the genetic effects of phenotypic variation is frequently challenging because of
genetic redundancy, condition-specific requirements for genes, and/or changes in physiology …
genetic redundancy, condition-specific requirements for genes, and/or changes in physiology …
[BOOK][B] Investigating Complexity in Transcriptome Expression, Regulation, and Evolution Using Mathematical Modeling
NL Panchy - 2017 - search.proquest.com
… By Nicholas Louis Panchy To date, gene expression has been characterized in over one
thousand species across more than a million experimental conditions. With this wealth of data, …
thousand species across more than a million experimental conditions. With this wealth of data, …